Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal3g2108 ATGTCAAATTTGCAAATGGCCCATGTTGATTTAGAACAAGGAAATCATCTTCATCATCATAATCATAGTTCTGATGTGAGTGGTGAAGGTAGTTTATGTTTCTCTGATGCAGATGATGGTTCAAGCTATTCTCATTTCTACTCAACAAATGGTGGTTCATATGATGATTATTCTTTTGCTTGTGTTTCTGATCCTGAACTTGGTTGTGTTCATGATTCTGGTAGAGTTTCTTCTGTTACTGATTGTTCTGTTGAGGTTGATATTATAATTGAGAGGGTTCCTGAGATTAAGGTGCATTTGGCTAAAGTGGAGAAAGATTGTAGGATTTGTCATATGGGTTTGGAGAGTGAAAGTCATGAATCTGGTCCTCCTATTGAATTAGGGTGTTCTTGTAAGGAGGATTTAGCTGCTGCTCATAAGAATTGTGCTGAGGCTTGGTTCAAGATTAAGGGAAATAGGACCTGTGAAATTTGTCATTCTGTCGCGCGGAATGTTTACAGTGCAACTGAGGAATCAACTGAGCATGTGATTGACATTAACAACGCTACCGCATCGTCCACACTCTCAACAGCCGTTCCTTCAGCAGAACCTCAAAGATTTTGGCACGGCCATCGCTTCTTGAATTTTCTGCTTGCTTGTATGGTTTTTGCATTTGTCATATCATGGCTTTTCCACTTTAATATGCCATCATCTTAG 696 0.3937 MSNLQMAHVDLEQGNHLHHHNHSSDVSGEGSLCFSDADDGSSYSHFYSTNGGSYDDYSFACVSDPELGCVHDSGRVSSVTDCSVEVDIIIERVPEIKVHLAKVEKDCRICHMGLESESHESGPPIELGCSCKEDLAAAHKNCAEAWFKIKGNRTCEICHSVARNVYSATEESTEHVIDINNATASSTLSTAVPSAEPQRFWHGHRFLNFLLACMVFAFVISWLFHFNMPSS* 232
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal3g2108 231 SUPERFAMILY RING/U-box 104 162 - -
Mal3g2108 231 Pfam RING-variant domain 107 158 IPR011016 GO:0008270
Mal3g2108 231 PANTHER OS01G0850200 PROTEIN 5 230 - -
Mal3g2108 231 PANTHER ZINC FINGER, RING-CH-TYPE 5 230 - -
Mal3g2108 231 CDD RING_CH-C4HC3_MARCH 107 159 - -
Mal3g2108 231 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 96 170 IPR013083 -
Mal3g2108 231 ProSiteProfiles Zinc finger RING-CH-type profile. 99 165 IPR011016 GO:0008270
Mal3g2108 231 SMART ringv_2 106 159 IPR011016 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal3g2108 Mal-Chr3 87165814 87168900 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal3g2108 70 231 C3H Transcription Factor Family AT5G05830 58.896 6.70e-64 196
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal3g2108 - - gmx:100808666 383.645
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mal3g2108 3 87165814 87168900 Mal2g2778 2 36520866 36523345 ECH
Mal3g2108 3 87165814 87168900 Mal8g1186 8 18423107 18425253 ECH
Mal3g2108 3 87165814 87168900 Mal3g2108 3 87165814 87168900 ECH