Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal3g2089 ATGGGTAATGAGTTTTTCAAACAGAAGAAGTTTAAGGAAGCTATTGATTTCTATTCAAGGAGCATTGCCTTCTCACCAACTGTTGTAGCCTATGCAAACAGGGCAATGGCCCATATAAAGCTAAGAAGATTTCGAGAGGCTGAGGATGACTGTACAGAGGCCTTAAATCTTGATGACCGTTACATAAAAGCATTCTCGCGGCGAGCAACAACTAGAAAAGAACTTGGCAAAAATAAGGAATCCATGGAGGATGCCGAGTTTGCCATGAGGTTGGAACCTAGCAATCAAGAAGTCAAGAAACAGTATGCTGATGCTAAGTCACTGTACGAGAAGGTGGAGTTGTACTTTTGTGTTCGACTACATATGATATGA 372 0.414 MGNEFFKQKKFKEAIDFYSRSIAFSPTVVAYANRAMAHIKLRRFREAEDDCTEALNLDDRYIKAFSRRATTRKELGKNKESMEDAEFAMRLEPSNQEVKKQYADAKSLYEKVELYFCVRLHMI* 124
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal3g2089 123 PANTHER OS05G0129900 PROTEIN 2 112 - -
Mal3g2089 123 Pfam Coatomer epsilon subunit 22 112 - -
Mal3g2089 123 Gene3D Tetratricopeptide repeat domain 1 93 IPR011990 GO:0005515
Mal3g2089 123 SUPERFAMILY TPR-like 1 113 IPR011990 GO:0005515
Mal3g2089 123 SMART tpr_5 62 95 IPR019734 GO:0005515
Mal3g2089 123 SMART tpr_5 29 61 IPR019734 GO:0005515
Mal3g2089 123 SMART tpr_5 1 28 IPR019734 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal3g2089 Mal-Chr3 86665946 86669891 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal3g2089 2 64 U-box Gene Family AT3G07370 43.750 3.80e-12 59.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal3g2089 K23002 - gmx:100808255 194.897