Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal3g2066 ATGGCTGATGAGGGTTTTGAAAATTATTATCATATCCCACAACAAAGTAGAAGAGAAAAACTTCGTTATTTATCTCAAAACCAAACAAGTTTCATTGAATCTTCAACTAGTAATTATTCACCTTTACCTTCTCTCTATGATCCTTCACTCATTTCAGCTTTACAAGTTATAAATAGTAATAACCCTTTTCTTTATCAACCACAAAACCTTTACGATGGTGGAAGTAGTAGTAGTAACAATGAAGTAATGTTACTAAAAGCTGAACCTTTATCTTTATCTTTATCATCAAACAAAAACAATCAAAACAACCAGATGAGTGTTCATCATCATGGTTTAGAAGCTAATAATCTTCAGCGTTATGGTTCTGTTGTTGATGTTTCTAGGAACATGGTTCCATTAGGACCATTTACTGGTTATGCTTCTGTTTTGAAGGGATCGAGGTTTTTGAAACCTGCTCAACAATTATTGGATGAGATGTGTGATGTTGGTGTTCGTGCTGAGAAGATTATTGCTGCTGCTGATGCATCTTTAATGGAAACTACTCATATTAATGGTGTTGATGATGATACACTTGGTGATGATGGAAGGAAGAACAAATCTAGATTATTAACAGTGCTTGATGAGGTTTGCAGGAGGTACAGACAGTACTATCAGCAGATTCATGCAGTAATAACTTCATTTGAATATGTTGCTGGCCTTGGTAACGCAGCTCCGTATGCAAGTTTGGCTATAAATGCCATGTCCAAACATTTTAGATGCTTGAAGAATGTGATTACTGACCAACTTCAGTTTATCGGTAAGTCGAATTACCAGATAAGCAATAGAAAAGATGAATCTCCATGGTTTCACAGCGGCGATGTAGTCCCATACAGTCAAAGGCTAGGGTTTGTAGAACATGTCCAACAACCTGTTTGGCGACCTCAAAGAGGACTCCCCGAGCGTGCTGTCAGTGTTCTCAAGGCATGGTTGTATGAACACTTTCTGCATCCTTACCCTACTGATACCGACAAGCTAATGTTGTCTAAACAAACTGGTCTATCTCGTAACCAGGTATCTAATTGGTTTATAAATGCAAGAGTAAGGCTATGGAAACCAATGGTGGAGGAAATACACATGCTTGAATCACAGCAATCTCAAAAGGAATCACAAAGAGACGAACTATGTCGAAACAATTTAAGTGATAACAACATTGCTGAGAATCCATCTACCTCCACAGACAAGTTTCATGATATCGCATATAAACGCACAAGAAACGAACTTCACAACATGTCGGTGCTGAATCATAGTATTGCAAGCAATCAACAAGTTGGTGGTGTTGGAGTGAGCATGATGAATAATGGTGCAACAAGCAATGGTGTATCTCTGGCGCTCGGTCTTCATCAAAATCATGGAATTGGGTTATCCGAGCCGTTCAACATGAGTGCCACACCGCGTTTTGGTCTTGCACATCAACCTGATGGTTACGCCTCGAGTGGTTTTCAATCGCAGAATAGACAATTCGGGAGAGATTTTATCGGTGGGCAACTTTTGCGTGACTATGTAGGATGA 1548 0.3908 MADEGFENYYHIPQQSRREKLRYLSQNQTSFIESSTSNYSPLPSLYDPSLISALQVINSNNPFLYQPQNLYDGGSSSSNNEVMLLKAEPLSLSLSSNKNNQNNQMSVHHHGLEANNLQRYGSVVDVSRNMVPLGPFTGYASVLKGSRFLKPAQQLLDEMCDVGVRAEKIIAAADASLMETTHINGVDDDTLGDDGRKNKSRLLTVLDEVCRRYRQYYQQIHAVITSFEYVAGLGNAAPYASLAINAMSKHFRCLKNVITDQLQFIGKSNYQISNRKDESPWFHSGDVVPYSQRLGFVEHVQQPVWRPQRGLPERAVSVLKAWLYEHFLHPYPTDTDKLMLSKQTGLSRNQVSNWFINARVRLWKPMVEEIHMLESQQSQKESQRDELCRNNLSDNNIAENPSTSTDKFHDIAYKRTRNELHNMSVLNHSIASNQQVGGVGVSMMNNGATSNGVSLALGLHQNHGIGLSEPFNMSATPRFGLAHQPDGYASSGFQSQNRQFGRDFIGGQLLRDYVG* 516
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal3g2066 515 CDD homeodomain 305 366 IPR001356 GO:0003677
Mal3g2066 515 SMART HOX_1 305 369 IPR001356 GO:0003677
Mal3g2066 515 SUPERFAMILY Homeodomain-like 307 372 IPR009057 -
Mal3g2066 515 Gene3D - 308 370 - -
Mal3g2066 515 ProSiteProfiles 'Homeobox' domain profile. 302 365 IPR001356 GO:0003677
Mal3g2066 515 SMART prehox3 137 260 IPR006563 -
Mal3g2066 515 Pfam Associated with HOX 142 259 IPR006563 -
Mal3g2066 515 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 29 491 - -
Mal3g2066 515 PANTHER BEL1-LIKE HOMEODOMAIN PROTEIN 29 491 - -
Mal3g2066 515 Pfam Homeobox KN domain 322 361 IPR008422 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal3g2066 Mal-Chr3 86137031 86162337 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal3g2066 78 515 Homeobox Transcription Factor Family AT5G02030 48.975 2.15e-114 348
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-BELL Mal3g2066 POX 5.2e-35 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal3g2066 - - mtr:MTR_7g065050 858.211
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mal3g2066 3 86137031 86162337 Mal3g2066 3 86137031 86162337 ECH