Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal3g2048 ATGAATTCGTCATCAATTCCGGATTGTGTCGATAAATGCGTGAACAATGTCCATGAACAAAATGTACAACACAAGCAAGAAAGTATTGGCAATATTGAACGTCCCTTGGAAATGCAGTTTGATTCTGAGGAGGTGGCTTATGATTTTTATAATGCGTACAGTAAAAGAATTGGATTTGGTATTCGTCGAGAGTATGCAAATAAAAGTAAAGTAGATGGAATTTTGACTTCAAGAAGATTCACATGCTTCAAAGAGGGTACACGAGGTGTTGACAAAAGATGTCAGTCGACAGGGAACTCTAAAGCAGAAACCAGAACGGGATGTCAAGCGCGTATGGTTATTTCACTTGATCGGAAGATTGGAAAATACAAGGTTGTTGATTTTATAACTGAACATAACCACCCTCTTCAACCTCCAGAGTTAGTTCATATGATTCGCTCTCATAGGCACATAACTGAGGCACAAGCATCACAAATTATCTTAGGAGATGAATGTGGATTAAGACCAAAAGCTTTGCATGAATATATATCCAAGCAAGTTGGTGGAATAGAGGCGGTTGGTTTTACAAGAAAAGACCTTAAGAATCGGCTTGAAACCACACGAAAGGAGTCATTGAAGTATGGTGAAGTGGGTGCATTGATGATGTATTTCAAAAAAGAAAGTGAAAATCCCTCATTCTTTTATGACTTTCAGATGGATAATGAAAACCAAATAACAAATATATTTTGGGCGGATGCACAAATGATAAACGATTATGGGTACTTTGGTGACATCATCACTTTTGACACCACTTATAAGACAAATAAGGATTATCGGCCGCTGGGTGTATTTGTTGGATTTAATAACCACCGGCAAACAATCATTTTTGGGGCAACATTGTTATATGATGAAACAATACCTTCTTTTCGGTGGTTATTTGAAACTTTTCTCAAAGCAATGGGTGGAGAAAAGCCTAAAACCATTCTAACCGATCAAGATGCGGCAATGGCTAAGGCTATTTCTTTAGTTATGCCAGAAACATTTCATGGATTATGCACTTGGCATATAAGACAGAACGCTCTAAAGCATGTGAACCATTTATATCAAAAGAGTTCACGATTCTGTTTGGATCTTGAAGCTTGCATTGATCTACATGAAGAGGAGGATGAATTTTTGAATGCATGGAATGCTTTACTTGTTGAGCATAATGTTTTGGAAGGTTCGTGGTTGCATACGATTTTTCAATTGAAGGAAAAATGGGCATGGGCTTATGTTCGAAAGACATTCACTGCAGGTATGAGATCTACTCAATTAAGTGAGAGCTTTAATGCTGATTTGAAAAACCATTTGAAGTCGGATTTAAATTTGGTACAATTTTTTACACACTTTAAAAGAGCTGTCAATGGTAAGCGGAACAATGAGTCAGAAGCTGAATATGAGTCAAAACATAAGCTTCCTAGATTGAAAATGAAGAAGGCTCGTATGCTTGTACAAGCCGCAAATGTTTACACACCAAGAATTTTTGAGGAATTCCAAGAGGAATATGAAGAATATCAAGACACTTGCATAAAGGATTTGAATGGAGGTATGTATCTAGTCACAAATTATGATAATGCAAAGGAGAGGATAGTAATGGGAAATCCTACAGAAGCAAAAGTTTCTTGCACTTGTCGTAAATTTGAGACACATGGCATCTTATGCAGTCATGCTTTGAAAGTTTTAGATGTCATGAATATTAAGTTGATTCCCGAACATTATTTACTAAAGCGATGGACAAGAGATGCACGGTTGGGAAGTAATCAAGACTGGAATGGGAGGCATGTTGAATTAGACACAAAAGCTCATTTCATGATGCGATACAATGAGTTGTGTCCTCGAATGAATAAATTGACAAACAAAGCTTCGGGAACTCATGAAACTTACACTTTTTTGTCCAAAGTTTGTGAAGAGTCCAACAAAATAATTGATGATATGTTGTCCAAAAAGTGTGTGGATGGAGAATCGGCTGGAATGGTTCATCTATCCATATCAATTCAAAAGGATGAAATTGCCAACATGGATACTGCTGGCATGCCAAAAGGCGTAAAGAAGCGAGTTTCTTTACGAAATAATAACAAACGAGCAAAATCTTGGCTTGAGAGACATAATAAAAAGGTAGCTCAACAAAAGAGAAAGAAATCTCAAGAAAATGTAGTGCAATTGTTACCGGTAAGTTTGTTTTTATCAATATATTAA 2214 0.3668 MNSSSIPDCVDKCVNNVHEQNVQHKQESIGNIERPLEMQFDSEEVAYDFYNAYSKRIGFGIRREYANKSKVDGILTSRRFTCFKEGTRGVDKRCQSTGNSKAETRTGCQARMVISLDRKIGKYKVVDFITEHNHPLQPPELVHMIRSHRHITEAQASQIILGDECGLRPKALHEYISKQVGGIEAVGFTRKDLKNRLETTRKESLKYGEVGALMMYFKKESENPSFFYDFQMDNENQITNIFWADAQMINDYGYFGDIITFDTTYKTNKDYRPLGVFVGFNNHRQTIIFGATLLYDETIPSFRWLFETFLKAMGGEKPKTILTDQDAAMAKAISLVMPETFHGLCTWHIRQNALKHVNHLYQKSSRFCLDLEACIDLHEEEDEFLNAWNALLVEHNVLEGSWLHTIFQLKEKWAWAYVRKTFTAGMRSTQLSESFNADLKNHLKSDLNLVQFFTHFKRAVNGKRNNESEAEYESKHKLPRLKMKKARMLVQAANVYTPRIFEEFQEEYEEYQDTCIKDLNGGMYLVTNYDNAKERIVMGNPTEAKVSCTCRKFETHGILCSHALKVLDVMNIKLIPEHYLLKRWTRDARLGSNQDWNGRHVELDTKAHFMMRYNELCPRMNKLTNKASGTHETYTFLSKVCEESNKIIDDMLSKKCVDGESAGMVHLSISIQKDEIANMDTAGMPKGVKKRVSLRNNNKRAKSWLERHNKKVAQQKRKKSQENVVQLLPVSLFLSIY* 738
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal3g2048 737 ProSiteProfiles Zinc finger SWIM-type profile. 524 571 IPR007527 GO:0008270
Mal3g2048 737 PANTHER OS03G0181600 PROTEIN 20 651 - -
Mal3g2048 737 Pfam SWIM zinc finger 543 568 IPR007527 GO:0008270
Mal3g2048 737 Pfam FAR1 DNA-binding domain 48 138 IPR004330 -
Mal3g2048 737 SMART 26again6 546 573 IPR006564 GO:0008270
Mal3g2048 737 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 20 651 IPR031052 GO:0006355
Mal3g2048 737 Pfam MULE transposase domain 258 352 IPR018289 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal3g2048 Mal-Chr3 84979809 84982022 Dispersed/Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Mal3g2048 MULE 7.6e-27 CL0219
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal3g2048 - - cam:101500125 1192.56