Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal3g2012 ATGTCTTATAGCTATTTCCCCATTGCTTTCCAAAGAAAGATGGAGTACACCCAAAACCCTAATAAATCCGAGCAAATAAGATGGAGCTCGGACGATCCTGGACAAGTTAGGTCTTATACTTGTACATTTTGCAAGAGAGGGTTCTCTAATGCGCAAGCATTAGGAGGACACATGAATATCCATAGAAGAGATAGAGCCAAGCTCAAACAACAATCTTCCGAAGAAAATTTGCTTTCTTTGGACATCTCAAACAAAAACCCTAATGATCATATTGATTTGGAAGAGAATCATGAAACCCAAAAGGGTAAGTTAATTTCTACAAAAGAACTTCCTCATAGTTCTTCATTTGGTGTTATGGCTCAAAGGATTGAAGAGAAGAAATGTGATTTAGACCTTGAGCTTAGGTTAGGTTATCACCCAATGGATTCATCAACATTGAGCACTCGATCATTTTTTTGA 459 0.3747 MSYSYFPIAFQRKMEYTQNPNKSEQIRWSSDDPGQVRSYTCTFCKRGFSNAQALGGHMNIHRRDRAKLKQQSSEENLLSLDISNKNPNDHIDLEENHETQKGKLISTKELPHSSSFGVMAQRIEEKKCDLDLELRLGYHPMDSSTLSTRSFF* 153
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal3g2012 152 ProSitePatterns Zinc finger C2H2 type domain signature. 41 61 IPR013087 -
Mal3g2012 152 PANTHER OS07G0101800 PROTEIN 3 75 - -
Mal3g2012 152 PANTHER OS07G0101800 PROTEIN 81 141 - -
Mal3g2012 152 SMART c2h2final6 39 61 IPR013087 -
Mal3g2012 152 PANTHER C2H2 AND C2HC ZINC FINGER PROTEIN 3 75 - -
Mal3g2012 152 PANTHER C2H2 AND C2HC ZINC FINGER PROTEIN 81 141 - -
Mal3g2012 152 SUPERFAMILY beta-beta-alpha zinc fingers 37 65 IPR036236 -
Mal3g2012 152 Gene3D Classic Zinc Finger 17 103 - -
Mal3g2012 152 ProSiteProfiles Zinc finger C2H2 type domain profile. 39 66 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal3g2012 Mal-Chr3 82530879 82531337 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal3g2012 14 76 C2H2 Transcription Factor Family AT3G09290 54.167 2.03e-19 78.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Mal3g2012 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal3g2012 - - ccaj:109793777 185.652