Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal3g1993 ATGATGATGAATAATGGTGAAGAAGATGAACTCTATGAACAGTTATGGAAAGCTTGTGCAGGTCCTCATATTGAAGTTCCTCGTGCTGGAGAAAGAGTCTTCTATTTTCCTCAAGGACACATGGAACAATTAGAAGTATCAACAAATCAGGAACTAAATCAAAGGATTCCATTGTTCAAACTTCCCAACAAGATCCTTTGTCGTGTTGTCAATGTTCATTTACTGGCGGAACAAGAAACAGATGAGGTTTATGCACAGATAACTCTGGTACCAGAATCTAATCAAACTGAGCCTACAAGCCTTGATCCTTGTCCTGCTGAACCTCCAAGACCAAGAACTTACTCCTTCAGCAAGGTTCTAACTAACTCTGATACAAGTACTCATGGTGGCTTTTCTGTTCTTAGGAAACATGCCACAGAATGTCTTCCCTCATTGGACATGTCTCAATCTACTCCAACTCAGGAATTGGTTGCTAGGGATCTTCACAATTATGAATGGCACTTTAAGCATATATTTAGAGGTCAACCACGTCGACACTTGCTCACAACTGGATGGAGTACTTTTGTGACTTCAAAGAGATTAGTCGCTGGAGATACCTTTGTGTTTCTGAGAGGGAACAACGGAGAATTACGCGTTGGAGTGAGGCATCTTGCTTCTCCGCAGAGCTGCATGCCTTCGTCTGTGATTTCTGGTCAGAGTATGCACCTTGGAGTCCTTGCAACTGCATCTCATGCTGTTGCAACTCAAACTCTTTTTGTAGTATACTATAAGCCCAGGATGAGCCAGTTCATTGTAAGTGTGAATAAGTATATGGAAGCTATGAACCAAAAATTTAATGTTGGCATGAGGTTCAAGATGAGTTTTGATGGGGATGATTCCCCTGAGACTGACAAAAGATTTTCTGGCACTATAATTGGACAAGAGGATATTTCTTCACACTGGTTGAATTCAAAATGGAGATCACTCAAGGTTCAATGGGATGAAGCTGCATCCATTCCAAGACCTGATAGAATTTCACCATGGGAGATTGAACCCCTACTGGCGTCTGTTCCCACAACTATTCAACCTGCTGCTGTAAAATATAAAAGGCCTAGACTACCTAGTGAAGTTCCAGATTTTGGAGATACAACACTAGGCGACTCTACTTACTGGGAATCTGGGTTGACACAAACAGATATAACACAAGTTAATGTTATGTCTGAAAACCAAAGGAGTGAAAGTATGCATATATGGCATCATAAGCAAACTGATAATAGCAGCAGCAATGGTATATCGAGGAATCCGACTGATGGAAGTTGGCTATCTTCTCCTCATTCCAGTGGTCCTTCTCATTTGTGTCAAGACACGACAGACGATAGCAAGAGTGTCACAGTCTCAGCTTGGCCTATGTCAAAAACTCACTCAGAAATATTGAACAACAATGATCACTTGATTGACCAAGTTGTCAAGGATAACCAAAAAGAGGCTGCTACAAGCTGTAGATTGTTCGGTATTGATCTTATTGATCCTCGCACGAACACTCAGAAGGTGTCTGAGTATGCAGCAAATGTATTTGGAGTCACGTCTGAGGGATGCGTTGCCACTCCCTTGTCAAGAACTGATGCAGACCAAAATAAGTTTGATATCTCGAAGGCTTCAAAAGAAAGGAAACAAGAACAGCTACCAATATCTCCAAATGAAACACAAAGCAAACAAACCAATAGCAGAAGTTGCACTAAGGTTCAAATGCAGGGTGTTGCAGTCGGTCGTGCTGTGGACTTGACCGCATTGGATGGATACAATCAACTTATTGATGAATTAGAGAGGCTGTTTGACATAAAGGGACAGCTCCAACCAAGGAATAAGTGGGAAATTGTCTTCACTGATGATGAAGGGGATATGATGCTTGTTGGTGATGATCCATGGCCGGAATTCTGCAATATGGTGAGAAGAATCTTCATTTGTTCCAGCCAAGATGTGCACAAAATGAGTTGTTGTGGAACCAAACTACCTATCTCATCACTAGAAGAAACTGTAATAAGCTCAGACACAGCTGAGATATGA 2043 0.4156 MMMNNGEEDELYEQLWKACAGPHIEVPRAGERVFYFPQGHMEQLEVSTNQELNQRIPLFKLPNKILCRVVNVHLLAEQETDEVYAQITLVPESNQTEPTSLDPCPAEPPRPRTYSFSKVLTNSDTSTHGGFSVLRKHATECLPSLDMSQSTPTQELVARDLHNYEWHFKHIFRGQPRRHLLTTGWSTFVTSKRLVAGDTFVFLRGNNGELRVGVRHLASPQSCMPSSVISGQSMHLGVLATASHAVATQTLFVVYYKPRMSQFIVSVNKYMEAMNQKFNVGMRFKMSFDGDDSPETDKRFSGTIIGQEDISSHWLNSKWRSLKVQWDEAASIPRPDRISPWEIEPLLASVPTTIQPAAVKYKRPRLPSEVPDFGDTTLGDSTYWESGLTQTDITQVNVMSENQRSESMHIWHHKQTDNSSSNGISRNPTDGSWLSSPHSSGPSHLCQDTTDDSKSVTVSAWPMSKTHSEILNNNDHLIDQVVKDNQKEAATSCRLFGIDLIDPRTNTQKVSEYAANVFGVTSEGCVATPLSRTDADQNKFDISKASKERKQEQLPISPNETQSKQTNSRSCTKVQMQGVAVGRAVDLTALDGYNQLIDELERLFDIKGQLQPRNKWEIVFTDDEGDMMLVGDDPWPEFCNMVRRIFICSSQDVHKMSCCGTKLPISSLEETVISSDTAEI* 681
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal3g1993 680 CDD B3_DNA 115 215 IPR003340 GO:0003677
Mal3g1993 680 MobiDBLite consensus disorder prediction 555 571 - -
Mal3g1993 680 Gene3D - 277 350 - -
Mal3g1993 680 SUPERFAMILY DNA-binding pseudobarrel domain 104 245 IPR015300 -
Mal3g1993 680 Pfam B3 DNA binding domain 116 215 IPR003340 GO:0003677
Mal3g1993 680 PANTHER AUXIN RESPONSE FACTOR 1 668 - -
Mal3g1993 680 SUPERFAMILY CAD & PB1 domains 567 645 - -
Mal3g1993 680 Pfam AUX/IAA family 549 605 IPR033389 -
Mal3g1993 680 Pfam AUX/IAA family 615 653 IPR033389 -
Mal3g1993 680 ProSiteProfiles B3 DNA-binding domain profile. 116 218 IPR003340 GO:0003677
Mal3g1993 680 MobiDBLite consensus disorder prediction 413 451 - -
Mal3g1993 680 MobiDBLite consensus disorder prediction 414 451 - -
Mal3g1993 680 Gene3D - 114 217 IPR015300 -
Mal3g1993 680 Pfam Auxin response factor 242 323 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Mal3g1993 680 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 1 668 IPR044835 GO:0003677|GO:0006355|GO:0009725
Mal3g1993 680 MobiDBLite consensus disorder prediction 546 571 - -
Mal3g1993 680 SMART B3_2 116 218 IPR003340 GO:0003677
Mal3g1993 680 ProSiteProfiles PB1 domain profile. 569 650 IPR000270 GO:0005515
Mal3g1993 680 Gene3D - 564 657 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal3g1993 Mal-Chr3 82032892 82037931 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal3g1993 2 657 B3 DNA Binding Superfamily AT4G23980 57.402 0.0 684
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Mal3g1993 B3 6.9e-20 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal3g1993 K14486 - gmx:100803911 989.564
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mal3g1993 3 82032892 82037931 Mal7g0604 7 15968895 15973416 PCT