Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal3g1939 ATGGCTGGAATTATTCTCCTCACCATTGCATCATTAACCTCACTTTTTGTTGCAACCACTGCTCGAATCCCTGGTGTTTATAGCGGTGGACCTTGGCAAAGTGCTCATGCTACTTTCTACGGTGGTAGTGATGCCTCTGGAACAATGGGCGGTGCTTGTGGATACGGAAACCTATACAGCCAAGGCTACGGTGTAAACACAGCAGCACTAAGCACAGCACTATTCAACAATGGCTTATCTTGCGGTGCATGTTTTGAACTAAAGTGTGACCAAGATCCACGTTGGTGTAACCCAGGAAACCCATCAATCTTAATCACTGCAACAAACTTTTGTCCTCCAAATTTTGCTCAACCTAGTGACAATGGTGGTTGGTGCAACCCACCTAGACCTCACTTTGATCTTGCTATGCCTATGTTCCTTAAGATTGCTCAGTACCGTGCCGGAATTGTCCCCGTCGCTTACCGCCGGGTACCATGCAGAAAAGCAGGAGGCATAAGATTCACAATCAACGGTTTCCGTTACTTCAACTTGGTTCTAATCACCAACGTCGCCGGTGCAGGGGATATCGTGCGCGTGAGTGTGAAAGGAACCAACACTGCATGGATGCCAATGAGTCGTAACTGGGGGCAAAATTGGCAATCCAATGCAGTTTTTGTTGGCCAAGCTCTCTCTTTTAGGGTTACCGGCAGTGACCGTCGTACATCAACATCGATGAACGTGGCACCACCTCATTGGCAATTTGGACAAACCTTCACCGGAAAGAATTTCCGAGTCTAA 777 0.4762 MAGIILLTIASLTSLFVATTARIPGVYSGGPWQSAHATFYGGSDASGTMGGACGYGNLYSQGYGVNTAALSTALFNNGLSCGACFELKCDQDPRWCNPGNPSILITATNFCPPNFAQPSDNGGWCNPPRPHFDLAMPMFLKIAQYRAGIVPVAYRRVPCRKAGGIRFTINGFRYFNLVLITNVAGAGDIVRVSVKGTNTAWMPMSRNWGQNWQSNAVFVGQALSFRVTGSDRRTSTSMNVAPPHWQFGQTFTGKNFRV* 259
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal3g1939 258 SMART dpbb_1 67 154 IPR007112 -
Mal3g1939 258 Gene3D - 164 256 IPR036749 -
Mal3g1939 258 SUPERFAMILY Barwin-like endoglucanases 31 182 IPR036908 -
Mal3g1939 258 Pfam Lytic transglycolase 67 154 IPR009009 -
Mal3g1939 258 SUPERFAMILY PHL pollen allergen 162 253 IPR036749 -
Mal3g1939 258 Pfam Expansin C-terminal domain 165 242 IPR007117 -
Mal3g1939 258 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 174 253 IPR007117 -
Mal3g1939 258 PRINTS Expansin signature 163 175 IPR002963 GO:0009664
Mal3g1939 258 PRINTS Expansin signature 175 196 IPR002963 GO:0009664
Mal3g1939 258 PRINTS Expansin signature 103 113 IPR002963 GO:0009664
Mal3g1939 258 PRINTS Expansin signature 62 76 IPR002963 GO:0009664
Mal3g1939 258 PRINTS Expansin signature 122 139 IPR002963 GO:0009664
Mal3g1939 258 PRINTS Expansin signature 139 152 IPR002963 GO:0009664
Mal3g1939 258 PRINTS Expansin signature 89 100 IPR002963 GO:0009664
Mal3g1939 258 PRINTS Expansin signature 239 255 IPR002963 GO:0009664
Mal3g1939 258 PRINTS Expansin signature 210 231 IPR002963 GO:0009664
Mal3g1939 258 PRINTS Expansin/Lol pI family signature 239 253 IPR007118 GO:0005576
Mal3g1939 258 PRINTS Expansin/Lol pI family signature 71 89 IPR007118 GO:0005576
Mal3g1939 258 PRINTS Expansin/Lol pI family signature 49 67 IPR007118 GO:0005576
Mal3g1939 258 PRINTS Expansin/Lol pI family signature 201 215 IPR007118 GO:0005576
Mal3g1939 258 PRINTS Expansin/Lol pI family signature 31 46 IPR007118 GO:0005576
Mal3g1939 258 PRINTS Expansin/Lol pI family signature 147 163 IPR007118 GO:0005576
Mal3g1939 258 PANTHER EXPANSIN-A15 4 257 IPR002963 GO:0009664
Mal3g1939 258 PANTHER EXPANSIN 4 257 - -
Mal3g1939 258 Gene3D - 18 160 IPR036908 -
Mal3g1939 258 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 50 164 IPR007112 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal3g1939 Mal-Chr3 80397296 80400510 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal3g1939 4 258 Expansin Gene Family AT2G39700 83.137 8.43e-160 442
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal3g1939 - - gmx:547955 512.686
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mal3g1939 3 80397296 80400510 Mal8g1334 8 25108856 25110553 ECH
Mal3g1939 3 80397296 80400510 Mal3g1939 3 80397296 80400510 ECH
Mal3g1939 3 80397296 80400510 Mal4g0547 4 5337253 5338600 ECH
Mal3g1939 3 80397296 80400510 Mal7g2282 7 80714371 80716770 ECH