Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal3g1885 ATGGCGGAACCCAAGGAGGGTTTCACCGTTCTTCTCCACAATCTCATCGACATTGCCACCGAAATCTCTCAAATCTCCACCTTCAATCCCTTAATCAAAACCCAATGCTTCGATCTCAGCCGTAGAATCACTTTCCTCGTTCCGCTATTTCATCACCTCCTTAACGACGTCGTTTTCGTTCCCTCTGAAACCCTAGTTTCGCTTCAACATGCTTTTCTCTCCGCCAAAGATTGGCTTCGATTTTGTTCACAATCGAGCCAACTCTACATGATACTGGAGAGGGAGAAAATTAAGTGCAAATTCAGCGATGTCGCTGCTCAATTTGAACAAGCTATAAGTGGGGTTTCATGTGATAAACTGGATATTTCTGAGGAGCTCAAGGAGCAGGTTGCACTTGTACTTGCTCAGTTTAGAAGGGTCAAAGAGCATTTTGATCCACCTGGTCTTGAGCTTTATGAGCATCTGTTGTCTATCTATAACCAGAGCTGTGATGTGAATACTGAACTAGCTGCACTACGTTTAATCTGTGAAAAGCTGCAATATGTGAGTGTGGAAGATATCAAACAAGAGTCACTAGCTCTACATAAGATGATTGTTGATGAGGGTGGTTGTTATGAGAAAAGCGCGCAGAGGTTGTCAATGGTGCTGAAAAAAATTGAAGAGTTTTTGTTAAAGGAATCTGAAAATAATGGAGGTTGTTGTTTTGAGAAAAGCTCACATGTGTTGTTTAGTGGGGATTTGCCTACTCCAACTGATGAGCCATGCGTGAAATCAGGTTGTCAGTCACCAGTTGTGCCAGAGGAGTTTCGCTGCCCAATATCTCTTGAGCTAATGAAAGATCCTGTTATCATTTCCACAGGGCAGACATATGAACGAGCTTGCATAAAGAAATGGCTTGATGCGGGGCATCGAACATGTCCCAACACTCAGCAGATTCTTTCCAGCCCCATCCTCATACCTAACCATGCTTTATACAGCCTGATTTCAAATTGGTGTGAGACAAATGGAGTGGAACCACCTAGAAGGTTAGGAAATTTCTGGCTCTGTAAGGAATCATCTGACGGCTACTCTGAATTGATAAATCTTGATACCTTAATGAGGAAACTTGCTTCCAGTTACATTGAGGATCAGCGTTGTGCAGCAGGGGAGCTCCGTCTTCTTGCCAGACACAATAGTCAAAATCGAAAGTTGATTGGTGATGCTGGTGCTATACCCCTCCTTGTTGTTCTCCTCTATGTGCCTGATGCTATCACCCAAGAGCATGCAGTTACTGCTCTTCTCAATCTATCTATCTGCGATGAAAACAAAGAGCGCATCATGGCTTCCGAGGCTCTACCGGGAATCCTTCATGTGCTTAAAAATGGTTGTATGGCAGCTCGTGAAAATGCAGCAGCCACCTTTTTCAGCCTCTCTGGAGGGGATCAGAACAAAGTGGCAATTGGTGCATCTGGAGCAATCGAGGCACTAGTTACTCTCTTCTGCGAAGGAAGTCAGAGAGGAAAGGTCGATGCTGCAACAGCACTATTCAAACTGTGTTTATACCATGGGAACAAAGGACGTGTTATTAAGGCCGGTATTGTGCCCAAGTTGATAGAAATGTTGACGGCAGGGGAGATGAGGGATGAAGCATTGGCAATCATGGATGTAATAGTTAGCCACCCTGATGGAAAAGCCGCAATTGTATCTACCAATGCTATTTCCACTTTGGTGGAATTAATCAATAGTGGATCTTCCAGGAACAAAGAGAATGCAACTTCAGTGCTTGTGCACCTCTGTAGAGGAAATCCACTACACCTGTCGGTTGTCGCTTCACTTGGAGTGATCAATCCTCTCTTGGAACTGGTGGAAAATGGTTCAGAAAGGGGTAAGAGAAAAGCTGCACAGCTTCTTGAGTTGTTGGGTGTTTAG 1908 0.4429 MAEPKEGFTVLLHNLIDIATEISQISTFNPLIKTQCFDLSRRITFLVPLFHHLLNDVVFVPSETLVSLQHAFLSAKDWLRFCSQSSQLYMILEREKIKCKFSDVAAQFEQAISGVSCDKLDISEELKEQVALVLAQFRRVKEHFDPPGLELYEHLLSIYNQSCDVNTELAALRLICEKLQYVSVEDIKQESLALHKMIVDEGGCYEKSAQRLSMVLKKIEEFLLKESENNGGCCFEKSSHVLFSGDLPTPTDEPCVKSGCQSPVVPEEFRCPISLELMKDPVIISTGQTYERACIKKWLDAGHRTCPNTQQILSSPILIPNHALYSLISNWCETNGVEPPRRLGNFWLCKESSDGYSELINLDTLMRKLASSYIEDQRCAAGELRLLARHNSQNRKLIGDAGAIPLLVVLLYVPDAITQEHAVTALLNLSICDENKERIMASEALPGILHVLKNGCMAARENAAATFFSLSGGDQNKVAIGASGAIEALVTLFCEGSQRGKVDAATALFKLCLYHGNKGRVIKAGIVPKLIEMLTAGEMRDEALAIMDVIVSHPDGKAAIVSTNAISTLVELINSGSSRNKENATSVLVHLCRGNPLHLSVVASLGVINPLLELVENGSERGKRKAAQLLELLGV* 636
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal3g1885 635 Gene3D - 503 635 IPR011989 -
Mal3g1885 635 ProSiteProfiles U-box domain profile. 264 338 IPR003613 GO:0004842|GO:0016567
Mal3g1885 635 SMART arm_5 514 552 IPR000225 GO:0005515
Mal3g1885 635 SMART arm_5 553 593 IPR000225 GO:0005515
Mal3g1885 635 SMART arm_5 391 431 IPR000225 GO:0005515
Mal3g1885 635 SMART arm_5 432 472 IPR000225 GO:0005515
Mal3g1885 635 SMART arm_5 473 513 IPR000225 GO:0005515
Mal3g1885 635 SMART arm_5 595 635 IPR000225 GO:0005515
Mal3g1885 635 Gene3D - 11 118 IPR036537 GO:0007166
Mal3g1885 635 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 402 444 IPR000225 GO:0005515
Mal3g1885 635 Pfam Armadillo/beta-catenin-like repeat 554 593 IPR000225 GO:0005515
Mal3g1885 635 Pfam Armadillo/beta-catenin-like repeat 391 430 IPR000225 GO:0005515
Mal3g1885 635 PANTHER U BOX DOMAIN-CONTAINING 9 633 - -
Mal3g1885 635 SUPERFAMILY RING/U-box 265 340 - -
Mal3g1885 635 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 265 338 IPR013083 -
Mal3g1885 635 Gene3D - 347 501 IPR011989 -
Mal3g1885 635 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 9 633 - -
Mal3g1885 635 SMART Ubox_2 268 331 IPR003613 GO:0004842|GO:0016567
Mal3g1885 635 CDD RING-Ubox_PUB 269 311 IPR045210 -
Mal3g1885 635 SUPERFAMILY ARM repeat 348 633 IPR016024 -
Mal3g1885 635 Pfam U-box domain 265 335 IPR003613 GO:0004842|GO:0016567
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal3g1885 Mal-Chr3 78538976 78544624 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal3g1885 13 631 U-box Gene Family AT3G46510 49.600 0.0 612
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal3g1885 - - var:108326899 765.377
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mal3g1885 3 78538976 78544624 Mal3g1885 3 78538976 78544624 ECH