Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal3g1867 ATGTCTTCCCAACCTTTCATCACAAACCTCCATCTTTTCCTTCTTCTCTTCACACTTCTTGTCCCAATTTCTTTTGCTTCAACTAATGAAGTTACTATCTTAGTTTCATGGATTCATAGCTCCTCAAAAGTCCCTTCATCAACTTTTTCCAATTGGAACCCTCTAGACTCAAATCCATGCAAATGGTCATTCATAACATGTTCATCACAAAACTTTGTAACTGAAATCAACATCCAAAATATTCAACTAGCCCTTCCTTTTCCTTCAAATATCTCTTCACTTTCCAACCTTCAAAAGCTAGTTATTTCTGGAACCAACCTCACTGGAACCATTCCCTTTGAAATTGGTAACTGTTTTAACCTCATAACCATTGATCTTAGCTCAAATAGTCTTGTTGGTGAAATTCCTTCAACTATAAGAAACCTCAAAAATCTTCAAAACTTGATTTTGAACTCTAACCAATTAACTGGTTCAATACCAATTAAACTTGGTGATTGTGTTAATCTCAAAAACCTTGACATTTTTGACAATAACCTTGGTGGAAACCTTCCTATTGAGCTAGGGAAACTTTCAAATCTTGAAGTTATAAGAGCTGGTGGAAACAAAGATATTGTAGGGAAGATTCCAGAAGAATTAGGTGAATGCAAGAATTTGACTGTTTTAGGACTTGCTGACACCAAAATTTCAGGTTCAATACCTAATACATTAGGTAAATTAAGTATGCTTCAAACAATATCTATTTATAGTACTCTAATTTCTGGTGAAATTCCTCATGAAATTGGTAACTGTTCTGAGCTTGTGAACTTGTATTTGTATGAGAATGATCTTTCTGGTCAGATTCCTTTTGAAATAGGTAAGCTTATGAAGCTTGAAAAGATTTTGCTATGGCAAAATAGTTTTGTTGGTAGCATACCTGAGGAAATTGGAAACTGTAGTAGTTTGAAGATTCTTGATTTGTCTTTGAATTATTTCTCTGGTGGCATACCGAAAAGTTTAGGGAAACTATCGAATCTTGAAGAGCTTATGTTGAGTAACAATAACATTTCTGGTTCGATACCAGCTTCGATTTCGAATCTTACAAATTTGATACAGTTGCAGTTAGATACAAATGAGATATCAGGTTTGATTCCAGTTGAGATTGGAAAGTTGACGAAGCTAACGGTGTTTTTCACGTGGCAGAACAAACTTGAAGGTAGAATTCCATCAGAGTTAGGAGATTGTTTAAGCCTTGAGGCTTTGGATTTGTCTTATAATTCACTCAGTGATAGTTTACCTTCAGGTCTTTTTAAGCTTCAGAATTTAACTAAGCTTTTATTGATTTCTAATGATATCTCTGGCTCTATTCCTCCTGAGATTGGTAACTGTAGTTCTTTGATTCGGCTCCGGCTTTTAGATAACAGAATCAATGGTGAGATACCAAGAGAAATAGGATTTCTTAATAACCTTAATTTCCTTGATCTTTCTGAAAATCGTCTTAGTGGTTCGGTTCCGTTAGAGATTGGAAACTGTAAAGAACTTCAAATGTTGAATCTGAGTAATAACTCTCTTTCTGGTGATTTGCATGGTTATTTGTCTTCTCTTACAATGCTAGAAGTTTTGGATGTTTCAATGAATAACTTTTCTGGTGAGGTTCCAATGAGTATTGGTCAATTAACTTCACTGCTTAGAGTTATTTTAAGCAAAAACTCTTTATCCGGATCGATTCCTTCGTCACTTGGGAAATGCTCAGGTATTCAACTTCTTGACCTTAGCAGCAATATGTTCTCGGGGAGCATACCGCGAGAATTGTTTCAAATTGAAGCACTTGATATTGCTTTAAATTTGAGTCATAATGCATTATCTGGAGTGATCCCGGAAGAGATTTCGGCTCTGAACAAGTTGTCTGTTCTAGACCTTTCACATAACAATCTTGAAGGTGACATGATGGTGTTTTCAGGCCTTGAAAATCTTGTTTCTTTGAACATTTCATACAACAAATTCACTGGTTATTTACCTGACAGCAAGTTGTTTCATCAACTAGCAGCAACAGATTTGGTTGGAAATCAAGGTTTGTGTCCTAATGGTCATGATTCATGTTTCATTGAAAATGCTTCAATGTCAAAGATGTTAAATGGATCTAGTTCTAAGAGGTCAGAGGTGATTAAAGTGGCCATTGGATTGCTCAGTTCATTGACTGTTGCAATGGCAATCTTTGGAGTTGTTACAGTCTTTCGAGCGAGGAAACTCGTTCGAGACGACAATGATTCCGAGATGGGAGGAGGAGGAGGTGATTCATGGCCTTGGCAGTTCACACCATTCCAAAAGGTAAACTTTTGTGTGGAGCAAATCCTAAAATGTTTGGTAGAATCCAATGTAATTGGAAAAGGGTGTTCGGGGATCGTTTATCGCGCGGAAATGGAAAATGGCGATGTCATTGCAGTGAAAAGACTATGGCCAACAACAATGGCAGCCACCGCTGCTGCAAGACATAATCATAGTCAAAGCGACAAGTTAGCAGTTAATGGAGGAGTTCGCGATTCGTTTTCAGCCGAGGTAAAAACTCTTGGATCAATTCGCCACAAGAACATTGTGAGGTTCTTAGGTTGCTGTTGGAACAGAAACACAAGACTGCTTATGTATGATTACATGCCAAATGGGAGTCTTGGAGGTTTACTTCATGAAGGAAGTGGTAATTGCTTGGAGTGGCACATTAGATTCAAGATAATACTAGGAGCAGCTCAAGGTGTGGCTTATTTACACCATGATTGTGCTCCTCCTATTGTTCACAGAGATATTAAGGCCAATAACATCCTCATAGGTCTTGAATTTGAACCATACATAGCTGATTTCGGACTTGCAAAACTTGTTGATGATGGAGATTTTGCGCGATCTTCAAGTACACTAGCTGGTTCTTATGGTTACATAGCTCCTGAGTATGGATACATGATGAAGATAACCGAGAAAAGTGATGTATACAGCTACGGTATTGTTGTACTAGAAGTACTAACAGGGAAGCAACCAATCGATCCAACGATACCAGATGGACTTCACATTGTTGATTGGGTTAGACAGAAAAGAGGCGGAGTTGAAGTGTTAGATGAAAGCTTACGAGCAAGGCCAGAATCCGAAATCGAAGAAATGTTGCAAACTTTAGGTGTTGCTTTGTTATGTGTAACTTCAAGCCCTGATGACAGACCAACAATGAAAGATGTGGTTGCAATGATGAAAGAAATTAAACAAGAGAGAGATGAATCTGTGAAAGTTTTTGATGGATCTTCTACAAATGATCAACATGAAAGTAATCATTTCAATGAAGAATCTGTGGAAGTGATGAAACATTCATGTCCAACATCAAGCAGCAGTAACACAAATATGAAATTACAACACTAA 3369 0.3734 MSSQPFITNLHLFLLLFTLLVPISFASTNEVTILVSWIHSSSKVPSSTFSNWNPLDSNPCKWSFITCSSQNFVTEINIQNIQLALPFPSNISSLSNLQKLVISGTNLTGTIPFEIGNCFNLITIDLSSNSLVGEIPSTIRNLKNLQNLILNSNQLTGSIPIKLGDCVNLKNLDIFDNNLGGNLPIELGKLSNLEVIRAGGNKDIVGKIPEELGECKNLTVLGLADTKISGSIPNTLGKLSMLQTISIYSTLISGEIPHEIGNCSELVNLYLYENDLSGQIPFEIGKLMKLEKILLWQNSFVGSIPEEIGNCSSLKILDLSLNYFSGGIPKSLGKLSNLEELMLSNNNISGSIPASISNLTNLIQLQLDTNEISGLIPVEIGKLTKLTVFFTWQNKLEGRIPSELGDCLSLEALDLSYNSLSDSLPSGLFKLQNLTKLLLISNDISGSIPPEIGNCSSLIRLRLLDNRINGEIPREIGFLNNLNFLDLSENRLSGSVPLEIGNCKELQMLNLSNNSLSGDLHGYLSSLTMLEVLDVSMNNFSGEVPMSIGQLTSLLRVILSKNSLSGSIPSSLGKCSGIQLLDLSSNMFSGSIPRELFQIEALDIALNLSHNALSGVIPEEISALNKLSVLDLSHNNLEGDMMVFSGLENLVSLNISYNKFTGYLPDSKLFHQLAATDLVGNQGLCPNGHDSCFIENASMSKMLNGSSSKRSEVIKVAIGLLSSLTVAMAIFGVVTVFRARKLVRDDNDSEMGGGGGDSWPWQFTPFQKVNFCVEQILKCLVESNVIGKGCSGIVYRAEMENGDVIAVKRLWPTTMAATAAARHNHSQSDKLAVNGGVRDSFSAEVKTLGSIRHKNIVRFLGCCWNRNTRLLMYDYMPNGSLGGLLHEGSGNCLEWHIRFKIILGAAQGVAYLHHDCAPPIVHRDIKANNILIGLEFEPYIADFGLAKLVDDGDFARSSSTLAGSYGYIAPEYGYMMKITEKSDVYSYGIVVLEVLTGKQPIDPTIPDGLHIVDWVRQKRGGVEVLDESLRARPESEIEEMLQTLGVALLCVTSSPDDRPTMKDVVAMMKEIKQERDESVKVFDGSSTNDQHESNHFNEESVEVMKHSCPTSSSSNTNMKLQH* 1123
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal3g1867 1122 Pfam Leucine rich repeat 289 348 IPR001611 GO:0005515
Mal3g1867 1122 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE FAMILY PROTEIN-RELATED 10 1089 - -
Mal3g1867 1122 Gene3D Ribonuclease Inhibitor 363 431 IPR032675 -
Mal3g1867 1122 PRINTS Leucine-rich repeat signature 482 495 - -
Mal3g1867 1122 PRINTS Leucine-rich repeat signature 624 637 - -
Mal3g1867 1122 SMART serkin_6 780 1072 IPR000719 GO:0004672|GO:0005524|GO:0006468
Mal3g1867 1122 ProSitePatterns Serine/Threonine protein kinases active-site signature. 920 932 IPR008271 GO:0004672|GO:0006468
Mal3g1867 1122 Gene3D Ribonuclease Inhibitor 283 362 IPR032675 -
Mal3g1867 1122 SUPERFAMILY Protein kinase-like (PK-like) 762 1068 IPR011009 -
Mal3g1867 1122 SMART LRR_typ_2 142 166 IPR003591 -
Mal3g1867 1122 SMART LRR_typ_2 551 575 IPR003591 -
Mal3g1867 1122 SMART LRR_typ_2 647 672 IPR003591 -
Mal3g1867 1122 SMART LRR_typ_2 431 455 IPR003591 -
Mal3g1867 1122 SMART LRR_typ_2 479 503 IPR003591 -
Mal3g1867 1122 SMART LRR_typ_2 383 407 IPR003591 -
Mal3g1867 1122 SMART LRR_typ_2 335 359 IPR003591 -
Mal3g1867 1122 SMART LRR_typ_2 624 646 IPR003591 -
Mal3g1867 1122 Gene3D Transferase(Phosphotransferase) domain 1 876 1094 - -
Mal3g1867 1122 MobiDBLite consensus disorder prediction 1076 1122 - -
Mal3g1867 1122 ProSiteProfiles Leucine-rich repeat profile. 337 360 IPR001611 GO:0005515
Mal3g1867 1122 Gene3D Ribonuclease Inhibitor 432 696 IPR032675 -
Mal3g1867 1122 Gene3D Phosphorylase Kinase; domain 1 766 875 - -
Mal3g1867 1122 SUPERFAMILY L domain-like 394 724 - -
Mal3g1867 1122 SMART LRR_sd22_2 166 195 - -
Mal3g1867 1122 SMART LRR_sd22_2 142 163 - -
Mal3g1867 1122 SMART LRR_sd22_2 335 361 - -
Mal3g1867 1122 SMART LRR_sd22_2 624 649 - -
Mal3g1867 1122 MobiDBLite consensus disorder prediction 1104 1122 - -
Mal3g1867 1122 Gene3D Ribonuclease Inhibitor 27 181 IPR032675 -
Mal3g1867 1122 Gene3D Ribonuclease Inhibitor 182 282 IPR032675 -
Mal3g1867 1122 ProSiteProfiles Protein kinase domain profile. 780 1071 IPR000719 GO:0004672|GO:0005524|GO:0006468
Mal3g1867 1122 ProSitePatterns Protein kinases ATP-binding region signature. 786 808 IPR017441 GO:0005524
Mal3g1867 1122 SUPERFAMILY RNI-like 100 462 - -
Mal3g1867 1122 Pfam Protein tyrosine and serine/threonine kinase 783 1066 IPR001245 GO:0004672|GO:0006468
Mal3g1867 1122 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE RCH1 10 1089 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal3g1867 Mal-Chr3 78119052 78122904 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal3g1867 25 1092 Receptor kinase-like Gene Family AT5G56040 46.783 0.0 954
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Mal3g1867 PK_Tyr_Ser-Thr 3.3e-38 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal3g1867 - - gmx:100815339 1747.64
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mal3g1867 3 78119052 78122904 Mal3g1867 3 78119052 78122904 ECH