Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal3g1862 ATGGAGTTACGGTTTTCAACACAGTTCGTTTTCACCATTCTCGCTATAGCTCTTCTTTTTGCTTTCACCAATGCTATTGATTCTAATGAATCACGGGTTGTGAATGGAGAAGAGAAGTTGAAGATGCAGAGCTTGAAGAATTCATCAATGGCGGAAAGTTTAAGTGATGCTATCAATGAGCATGCAGTTGATAATCCAGAGGAGATTGCTTCCATGGTTGATACGACTATACGCAATCACACAGAGAGAAGGAGTCTGAATTTTTTCTCATGTGGGACTGGAAATCCAATGGATGATTGCTGGCGCTGTGACAAGCGTTGGTACATGCGGCGAAAGCGGTTAGCTGATTGTGCCATTGGTTTTGGTCGAAATGCCATTGGTGGCCGCGACGGCAGGTACTACGTCGTGACAAACCCAAGAGACGATGACCCCGTGAACCCCAGACCGGGCACTCTCCGTCATGCCGTCATTCAAGATAGGCCATTGTGGATTGTGTTCAAGAGAGACATGGTGATCACCCTGAAGCAAGAACTCATCATGAACAGCTTTAAGACCATTGATGGTCGTGGTGCCAATGTTCATATAGCTTTTGGAGCCTGCATTACTATTCAATTTATCACCAATGTCATCATCCATGGTATCCATATCCATGATTGTAAGCCGACTGGGAATGCTATGGTTCGTAGCTCCCCTTCCCATTTTGGATGGAGGACAATGGCTGATGGTGATGGCATTTCCATCTTTGGTTCCAGTCATATTTGGATTGACCACAACTCTATGTCTAATTGCGCTGATGGTCTTGTTGATGCTATTATGGGATCCACTGCAATTACCGTTTCCAATAACCACTTCACCCACCACAATGAGGTTATGCTATTGGGCCACAGTGACTCGTATGTCCGTGACAAGCAGATGCAAGTAACCATTGCCTACAACCATTTTGGGAAGGGTCTTATCCAAAGGATGCCAAGGTGCAGACATGGGTATTTCCACGTTGTAAACAACGACTATACACAATGGGTGATGTATGCCATTGGAGGCAGTGCTCAACCCACAATTAACAGCCAAGGCAACAGATACCTTGCCCCTCAAAACCCTTTTGCCAAAGAGGTGACAAAGAGGGTGGATACAGGGTCCGGAGTATGGAAAGGTTGGAATTGGAGGTCTGAGGGAGACCTTTTGCTAAATGGAGCTTTTTTCACTCCATCAGGAAGAGGAGCTGCAGCAAGCTATGCTAGAGCCTCAAGTTTGGGGGCCAAATCGTCTCATTTAGTTGGTACTTTAACTGCAGGTGCTGGTGTTATTAACTGTCGCAGAGGTGGTATGTGTTAA 1332 0.458 MELRFSTQFVFTILAIALLFAFTNAIDSNESRVVNGEEKLKMQSLKNSSMAESLSDAINEHAVDNPEEIASMVDTTIRNHTERRSLNFFSCGTGNPMDDCWRCDKRWYMRRKRLADCAIGFGRNAIGGRDGRYYVVTNPRDDDPVNPRPGTLRHAVIQDRPLWIVFKRDMVITLKQELIMNSFKTIDGRGANVHIAFGACITIQFITNVIIHGIHIHDCKPTGNAMVRSSPSHFGWRTMADGDGISIFGSSHIWIDHNSMSNCADGLVDAIMGSTAITVSNNHFTHHNEVMLLGHSDSYVRDKQMQVTIAYNHFGKGLIQRMPRCRHGYFHVVNNDYTQWVMYAIGGSAQPTINSQGNRYLAPQNPFAKEVTKRVDTGSGVWKGWNWRSEGDLLLNGAFFTPSGRGAAASYARASSLGAKSSHLVGTLTAGAGVINCRRGGMC* 444
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal3g1862 443 Pfam Pectate lyase 177 358 IPR002022 -
Mal3g1862 443 Gene3D - 94 436 IPR012334 -
Mal3g1862 443 SMART amb_all 169 366 IPR002022 -
Mal3g1862 443 SUPERFAMILY Pectin lyase-like 72 437 IPR011050 -
Mal3g1862 443 PANTHER PECTATE LYASE 36 440 - -
Mal3g1862 443 PRINTS Pollen allergen Amb family signature 343 362 IPR018082 -
Mal3g1862 443 PRINTS Pollen allergen Amb family signature 385 409 IPR018082 -
Mal3g1862 443 PRINTS Pollen allergen Amb family signature 117 134 IPR018082 -
Mal3g1862 443 PRINTS Pollen allergen Amb family signature 177 193 IPR018082 -
Mal3g1862 443 PRINTS Pollen allergen Amb family signature 414 437 IPR018082 -
Mal3g1862 443 PRINTS Pollen allergen Amb family signature 321 340 IPR018082 -
Mal3g1862 443 PRINTS Pollen allergen Amb family signature 241 262 IPR018082 -
Mal3g1862 443 PRINTS Pollen allergen Amb family signature 141 166 IPR018082 -
Mal3g1862 443 PANTHER PECTATE LYASE 18-RELATED 36 440 IPR045032 GO:0030570
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal3g1862 Mal-Chr3 78000701 78005868 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal3g1862 31 443 Polysaccharide Lyase AT4G13710 75.534 0.0 670
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal3g1862 K01728 - gmx:100809277 771.541
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mal3g1862 3 78000701 78005868 Mal3g1862 3 78000701 78005868 ECH