Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal3g1854 ATGGTTGTGATAGAGCAAGAGAAGACCGAGGTGAATCCATCCAACGCCACTGCCGTCGGCAACGACGCTTCCGACGGCTTCGAAACCGCCAGCGAAGCTGATCTCGATAGCGACGGAGATGACGGTGGAGATTTCAGCCGAGAAGAACAGAAGAAGAATCTCGAGCAACCGAAGCAGAGAGAGGGAGAACAGGAACAAGATGTTACTCAGAAAAGTGTTTCATCTGAGGATGCTTTGATCAATGAAGAGGAATTGAAACAGAAAGCATTGGCTGAAGCAAATGAAGCAAAAGTGGAAGGTAACAAATTTTTTGTAGATGGGAAGTATGAGGAGGCATTATCTCGATATGAACATGCTTTGCAAGTTGCACTAGATATGCCTTCATCTGTGGAAATACGCTCAATATGCCATGCTAACCGTGCTGTGTGCTTTTTGAAACTGGGAAAATATGAAAATACAATTAAAGAGTGCACAAAAGCATTGGAACTGAATCCCACATATGTTAAAGCTTTGGTAAGAAGAGGAGAGGCTCATGAAAAACTTGAACATTTTGAAGAGGCAATTGCTGATATGAAAAAGATCTTAGAAATTGATCCCTCAAATGATCAAGCTGGGAAATCCATTCGCCGACTAGAGCCCCTTGCTGCTGTAAAACGGGAAAAAATGAAAGAAGAAATGATTGCAAAATTGAAAGAAATGGGCAATTCTGTATTGGGACGCTTTGGGATGAGTGTTGACAACTTCAAAGCAGTCAAAGATCCAAACACTGGTTCCTATTCTATCTCAATGGAACGCTAA 798 0.4223 MVVIEQEKTEVNPSNATAVGNDASDGFETASEADLDSDGDDGGDFSREEQKKNLEQPKQREGEQEQDVTQKSVSSEDALINEEELKQKALAEANEAKVEGNKFFVDGKYEEALSRYEHALQVALDMPSSVEIRSICHANRAVCFLKLGKYENTIKECTKALELNPTYVKALVRRGEAHEKLEHFEEAIADMKKILEIDPSNDQAGKSIRRLEPLAAVKREKMKEEMIAKLKEMGNSVLGRFGMSVDNFKAVKDPNTGSYSISMER* 266
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal3g1854 265 MobiDBLite consensus disorder prediction 8 24 - -
Mal3g1854 265 MobiDBLite consensus disorder prediction 29 43 - -
Mal3g1854 265 MobiDBLite consensus disorder prediction 1 79 - -
Mal3g1854 265 PANTHER TETRATRICOPEPTIDE REPEAT PROTEIN 1 29 264 - -
Mal3g1854 265 ProSiteProfiles TPR repeat profile. 134 167 IPR019734 GO:0005515
Mal3g1854 265 Coils Coil 79 99 - -
Mal3g1854 265 ProSiteProfiles TPR repeat profile. 168 201 IPR019734 GO:0005515
Mal3g1854 265 Pfam Tetratricopeptide repeat 136 167 IPR001440 GO:0005515
Mal3g1854 265 SMART tpr_5 134 167 IPR019734 GO:0005515
Mal3g1854 265 SMART tpr_5 93 126 IPR019734 GO:0005515
Mal3g1854 265 SMART tpr_5 168 201 IPR019734 GO:0005515
Mal3g1854 265 MobiDBLite consensus disorder prediction 44 67 - -
Mal3g1854 265 PANTHER TETRATRICOPEPTIDE REPEAT PROTEIN 1 29 264 - -
Mal3g1854 265 Pfam Tetratricopeptide repeat 169 201 IPR013105 -
Mal3g1854 265 Gene3D Tetratricopeptide repeat domain 43 233 IPR011990 GO:0005515
Mal3g1854 265 SUPERFAMILY TPR-like 92 206 IPR011990 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal3g1854 Mal-Chr3 77927556 77931002 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal3g1854 93 224 Calmodulin-binding Proteins AT3G25230 41.429 3.89e-18 82.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal3g1854 K24926 - gmx:100808386 358.607