Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal3g1818 ATGAAGCCAACTTTGGGTCAAGCTCAAAGTAATTGGGAAGCTGATAAAATGCTTGATGTTTACATTCACGATTATTTTCTCAAAAGAAAGTTGCACAATGCTGCAAAAACTTTTATGGCAGAAGGAAAAGTTTCAACTGATCCAGTAGCAATTGATGCACCTGGAGGATTTCTTTTTGAGTGGTGGTCTGTCTTTTGGGATATATTCATCTCGAGAACAAACGAGAAACATTCTGAGCCTGCTGCATCTTACATCGAGCAAACAAAGACGAGAGAACAACTTCAAATGCAGCAATTGCAACTAATGCAACAGCGCAATGCACAGCTACAGCGAAGTAATCCTACTCATCCCGCACTGGGTGGTTCCTTAAACCCCATGAACTCTGAAGGTATGTTGGGGCAGCCACCAGCAAGTGTATTGGCCATGAAAATGTATGAAGAACGAATGAAACACCCTCATTCAATGGATTCAGATGCATCTCCAAATCTCATTGAAGCAAATAGAATGGCTCTTCTCAAATCAGCAACAAGTCATCAAGGTCAGCTGGTTCACGGTAATTCAGGGAATATGTCTGCGGCATTTCAGCAAATGCAGGCACGGTCTTCTTTGACCAATGACATCAAAGGAGAAATTAACATGGGTTCCAGTCCAAGGAGTTTGCCTATGGATTCATCAGTTTACCGACAAGCAATTTTACAATCAAAATCTGGGTTAGGCAGTGCAGGATTAAGCCAAGGAGTTACAAGTCTTCCGTTGAAGGGATGGCCTCTTACTGGAATTGATCAACTAAGACCTGGTTTGGGTGTACAAGTTCAGAAGCCTAATTTAACAACACAAAACCAATATCTTTTGGCATCCCAACAACAACAACAGGTCTTGGCGCAGGCTCAAGCTCAGGCACAACAAAACAACCTTGGAAATTCTAGCTATGGTGATATGGATCCACGTAGACTTTCTGGTCTTCCTCGAGGTAGCTTAAGTGCAAAGGATGGTCAATCTAACAGGAATGATGGATCTATTTCCTCCCAAATGCAATCAGGTTCACCTAAGATGAAGATGACCCAGTCACAGCAATCATTATCTCAGCAGCAAGAGCAGTTGCAGCAGCATCAACTACAGCAGAGTAACAGAAAAAGAAAGCAAGCTTCTTCTTCTGGACCTGCCAATAGCACTGGTACTGGAAACACAGCTGGTCCTTCACCTAATTCACCGTCATCAACACACACACCTGGTGATGGATTAAATGCAGCAAGCAGCATGCAAAATGTTAACAATGTGCAAAAGAGCATGATGATGTATGGTACAGATGCTACAGGAGGACTTGCATCATCAAATATACTTGATGATATAGATCAATTTGGAGATGTTGGTGCTTTGGATGATAATGTGGAGTCTTTTCTATCAAATGATGCTGGAGATGGTGGCAATCTCTATGGAACAATAAAACAAAGTCCAGCCGAGCAACCAAAAGAACCTCCAAGAACTTTCACCTTTGCTGAATTTAGCTGCATAAGAACAAGGAACACATTTACTTGCTGTCACTTTTCTTCAGATGGAAAGTTGCTTGCCAGTGCTGGAGAAGACAAGAAGGTTGTCCTGTGGAATATGGACACTTTACAGACAGAGACCACTCCTGAAGAACACAAATTAGTTATTTCAGATGTCCGTTTTAGACCAAATTCATCTCAGTTTGCGACAGCCTCGTCTGACAAATCTGTGCGGTTATGGGACGCAGCCAATCCAACCTATTGTGTTCAAGAATATAGTGGCCACAGTTCAGCAATTATGTCTCTTGATTTCCACCCTAAGAAGACTGATTTTTTCTGCTTCTGCGATAGTGAAAATGAAATTCGTTATTATAACATTACTTCATCCTCCTGTACCCGTGTATATAAGGGAGGTAATGCAAAAGTGAGGTTTCAGCCTAGATCGGGACAGTTACTTGCTGCAGCTTCTGATAAAGTAGTGTCTATTTTTGATGTTGAAACTGACAGACAAATTTTCTCACTCCAGGGTCATTCTGAACCGGTGAACAATATTTGCTGGGATGCTAATGGAGATATGCTGGCATCTGTTAGTCCAAATTTGGTGAAAATATGGAATTTGACCTCAGGGGAATGCATTCATGAGCTCAACTCCACTGGGAACCAGTTTTATTCCAGTGTTTTTCATCCAAGCTATTCAACTTTATTAGTAGTCGGAGGGATTTCGAGTATAGAGTTGTGGAACATGGCTGAGAACAAAAGCATGACAATTCCTGCACATGAGAATGCGATCTCTGCTTTGTCTGAGTCTACTGTTACTGGAATGGTTGCCTCTGCCAGTCGTGACAACTCTGTAAAGTTGTGGAAATAA 2355 0.4187 MKPTLGQAQSNWEADKMLDVYIHDYFLKRKLHNAAKTFMAEGKVSTDPVAIDAPGGFLFEWWSVFWDIFISRTNEKHSEPAASYIEQTKTREQLQMQQLQLMQQRNAQLQRSNPTHPALGGSLNPMNSEGMLGQPPASVLAMKMYEERMKHPHSMDSDASPNLIEANRMALLKSATSHQGQLVHGNSGNMSAAFQQMQARSSLTNDIKGEINMGSSPRSLPMDSSVYRQAILQSKSGLGSAGLSQGVTSLPLKGWPLTGIDQLRPGLGVQVQKPNLTTQNQYLLASQQQQQVLAQAQAQAQQNNLGNSSYGDMDPRRLSGLPRGSLSAKDGQSNRNDGSISSQMQSGSPKMKMTQSQQSLSQQQEQLQQHQLQQSNRKRKQASSSGPANSTGTGNTAGPSPNSPSSTHTPGDGLNAASSMQNVNNVQKSMMMYGTDATGGLASSNILDDIDQFGDVGALDDNVESFLSNDAGDGGNLYGTIKQSPAEQPKEPPRTFTFAEFSCIRTRNTFTCCHFSSDGKLLASAGEDKKVVLWNMDTLQTETTPEEHKLVISDVRFRPNSSQFATASSDKSVRLWDAANPTYCVQEYSGHSSAIMSLDFHPKKTDFFCFCDSENEIRYYNITSSSCTRVYKGGNAKVRFQPRSGQLLAAASDKVVSIFDVETDRQIFSLQGHSEPVNNICWDANGDMLASVSPNLVKIWNLTSGECIHELNSTGNQFYSSVFHPSYSTLLVVGGISSIELWNMAENKSMTIPAHENAISALSESTVTGMVASASRDNSVKLWK* 785
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal3g1818 784 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 752 784 - -
Mal3g1818 784 ProSiteProfiles LIS1 homology (LisH) motif profile. 14 46 IPR006594 GO:0005515
Mal3g1818 784 PRINTS G protein beta WD-40 repeat signature 771 784 IPR020472 -
Mal3g1818 784 PRINTS G protein beta WD-40 repeat signature 564 578 IPR020472 -
Mal3g1818 784 PRINTS G protein beta WD-40 repeat signature 522 536 IPR020472 -
Mal3g1818 784 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 545 577 - -
Mal3g1818 784 MobiDBLite consensus disorder prediction 304 418 - -
Mal3g1818 784 ProSiteProfiles Trp-Asp (WD) repeats profile. 515 544 IPR001680 GO:0005515
Mal3g1818 784 PANTHER TRANSCRIPTION FACTOR WD40-LIKE FAMILY-RELATED 9 784 - -
Mal3g1818 784 SMART WD40_4 581 621 IPR001680 GO:0005515
Mal3g1818 784 SMART WD40_4 663 701 IPR001680 GO:0005515
Mal3g1818 784 SMART WD40_4 624 660 IPR001680 GO:0005515
Mal3g1818 784 SMART WD40_4 538 577 IPR001680 GO:0005515
Mal3g1818 784 SMART WD40_4 745 784 IPR001680 GO:0005515
Mal3g1818 784 SMART WD40_4 500 535 IPR001680 GO:0005515
Mal3g1818 784 SMART WD40_4 704 743 IPR001680 GO:0005515
Mal3g1818 784 SMART Lish 14 46 IPR006594 GO:0005515
Mal3g1818 784 ProSiteProfiles Trp-Asp (WD) repeats profile. 752 784 IPR001680 GO:0005515
Mal3g1818 784 MobiDBLite consensus disorder prediction 326 418 - -
Mal3g1818 784 CDD WD40 511 784 - -
Mal3g1818 784 Pfam LisH 16 42 IPR006594 GO:0005515
Mal3g1818 784 Pfam WD domain, G-beta repeat 511 535 IPR001680 GO:0005515
Mal3g1818 784 Pfam WD domain, G-beta repeat 544 577 IPR001680 GO:0005515
Mal3g1818 784 Pfam WD domain, G-beta repeat 750 784 IPR001680 GO:0005515
Mal3g1818 784 Pfam WD domain, G-beta repeat 667 701 IPR001680 GO:0005515
Mal3g1818 784 Gene3D - 636 784 IPR015943 GO:0005515
Mal3g1818 784 Coils Coil 353 373 - -
Mal3g1818 784 Gene3D - 499 635 IPR015943 GO:0005515
Mal3g1818 784 ProSiteProfiles Trp-Asp (WD) repeats profile. 670 710 IPR001680 GO:0005515
Mal3g1818 784 SUPERFAMILY WD40 repeat-like 507 784 IPR036322 GO:0005515
Mal3g1818 784 ProSiteProfiles Trp-Asp (WD) repeats profile. 545 577 IPR001680 GO:0005515
Mal3g1818 784 ProSitePatterns Trp-Asp (WD) repeats signature. 522 536 IPR019775 -
Mal3g1818 784 PANTHER TRANSCRIPTIONAL REGULATOR OF FILAMENTOUS GROWTH FLO8 9 784 IPR044716 GO:0003714
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal3g1818 Mal-Chr3 76845233 76853174 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal3g1818 583 783 Miscellaneous Gene Families AT5G08390 22.330 1.65e-10 62.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR LUG Mal3g1818 WD40 0.076 CL0186
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal3g1818 - - gmx:100786946 1144.03