Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal3g1817 ATGGAGAACACAACATTCAAACATCTTGATGACGATGAACATGAAGAACAAGTCCCCGATTCCTTTTGTTGCTGCGTTTGTCTGGATCTATTATACAAGCCCATTGTACTATCTTGTGGTCACATATGCTGTTTCTGGTGTGTACATAAATCAATGAATGTTGTGCGCGAATCTAAGTGTCCAACATGTAGGAATCAATACTATCACTTCCCAACAGTCTGCCAAACGCTTCATTTTTTGCTTCTTAAGATGTATCCAGTTGCTTACAATAGAAGGATGAATCAAACTCTTGAGGAAGAGAAGAAATCAGGCTACTACTCCCCTGAATTTGATCTCGATAGATGTGAATCACAAGCTAAATTTGGTCATTCATGTAGCCCTTCTTCCTCCTCTATGATGAATCTGATTTCCAACTCCGGCAATGTCGGAACATCTGAATGTATGGACCAACCAGGGTCCACTGGCCATGAAGGAGAACCTGATATTAGTAGGACTCAAGTTGAAGGAAAAGCATTGCCTCGGGATAATCTTACACAACAGAAAATATCAGTTGCTGACGTGATGTGTACAATGTGCAAGCAACTGCTTTTTCATCCTTTAGTTCTTAATTGTGGTCATGTATACTGTGAAACTTGTGTCAACAAGTTAGCTGATGAGATGCTTAGATGCCAAGTTTGTCAAAGTCCACATCCAAGAGGATTTCCGAAAGTCTGTTTGGAGTTTGATCACTTTTTGGAAGAACAATTTCCTGAAGAATATGCACGGAGAACAGATGCTATTGAACTAAAGGATATCAAAGACAAACCTAAGACATCTTCCTCTTGTTCATTGAATAACGGTAACAAAGGAGAAAATATTGAACGGTTGTCTGATTCTGACTCGAAAGCTCACTTTGGAGTTGGTTGTGACTTTTGTGGGATATTACCTATCATTGGAAATAGATATAAATGCATTGACTGCAAGGAAAAAATAGGTTTTGATCTTTGTGAAGATTGCTACAACACTCGCTCCAAACTTCCAGGCCGATTTAATCAACAACATACCTCAGATCACAATTTCAAGCTTGTAGAACCCAACCCTAATCGTAACATAGTGTTGAGGCTGATCACTGGACAGTTAGGGGACAGTTCTTTCAACTTCCAGTCTTTAGGAAACATAGAATTTACAGCCGAAGCACTTGGGTTGTTTGATGGTGGCGAAGATGACCAGAATGAGCCTGATGCTACAAATTGA 1233 0.3974 MENTTFKHLDDDEHEEQVPDSFCCCVCLDLLYKPIVLSCGHICCFWCVHKSMNVVRESKCPTCRNQYYHFPTVCQTLHFLLLKMYPVAYNRRMNQTLEEEKKSGYYSPEFDLDRCESQAKFGHSCSPSSSSMMNLISNSGNVGTSECMDQPGSTGHEGEPDISRTQVEGKALPRDNLTQQKISVADVMCTMCKQLLFHPLVLNCGHVYCETCVNKLADEMLRCQVCQSPHPRGFPKVCLEFDHFLEEQFPEEYARRTDAIELKDIKDKPKTSSSCSLNNGNKGENIERLSDSDSKAHFGVGCDFCGILPIIGNRYKCIDCKEKIGFDLCEDCYNTRSKLPGRFNQQHTSDHNFKLVEPNPNRNIVLRLITGQLGDSSFNFQSLGNIEFTAEALGLFDGGEDDQNEPDATN* 411
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal3g1817 410 Gene3D - 290 356 IPR043145 -
Mal3g1817 410 ProSiteProfiles Zinc finger ZZ-type profile. 297 361 IPR000433 GO:0008270
Mal3g1817 410 SMART zz_5 296 345 IPR000433 GO:0008270
Mal3g1817 410 Pfam Zinc finger, ZZ type 297 337 IPR000433 GO:0008270
Mal3g1817 410 Pfam RING-type zinc-finger 189 215 IPR027370 -
Mal3g1817 410 SUPERFAMILY RING/U-box 184 230 - -
Mal3g1817 410 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRT1-LIKE 11 373 - -
Mal3g1817 410 ProSiteProfiles Zinc finger RING-type profile. 189 227 IPR001841 -
Mal3g1817 410 SMART ring_2 189 226 IPR001841 -
Mal3g1817 410 SMART ring_2 24 63 IPR001841 -
Mal3g1817 410 PANTHER UNCHARACTERIZED 11 373 - -
Mal3g1817 410 Pfam Zinc finger, C3HC4 type (RING finger) 22 66 - -
Mal3g1817 410 CDD RING-HC 24 63 - -
Mal3g1817 410 ProSiteProfiles Zinc finger RING-type profile. 24 64 IPR001841 -
Mal3g1817 410 SUPERFAMILY RING/U-box 296 356 - -
Mal3g1817 410 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 176 277 IPR013083 -
Mal3g1817 410 ProSitePatterns Zinc finger RING-type signature. 204 213 IPR017907 -
Mal3g1817 410 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 2 131 IPR013083 -
Mal3g1817 410 SUPERFAMILY RING/U-box 10 69 - -
Mal3g1817 410 MobiDBLite consensus disorder prediction 147 174 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal3g1817 Mal-Chr3 76836573 76842459 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal3g1817 22 66 C3H Transcription Factor Family AT2G42030 37.778 9.54e-07 48.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal3g1817 - - gmx:100787174 610.527