Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal3g1803 ATGGTGGTGACCAATGATGGGGGTCGTGACTATGATACTGAAACATATCTCTATGAAATGGAGAAAAATTGTGCCTTAGTCCTTAGTCACCTTGCTTTCAAAACTGAGTATCAAATCCTCATTGTTGATGTTGGAGCGTTGCACTATCTTGTAGAATTGTTAAAGACACATCAAAGTCCTACAATTTCTCAAGAACTTTTTTATGGTCTTCTAAGGAGAGCAGCTGATGCAATAACCTGCCTTGCCCATGAAAATACCAACATCCGGAACCTTGTCAGGCTGGAAGGTGGCATCCCTCCTCTTGTTGAATTGCTTGAATTTAATGATGCAAAGGTACAAAGAGCAGCTGCAGCTGCGTTGCGAACTCTTGCATTTCGAAATGATGACAATAAATATGAGATTGTTAGCTGCAATGCGATTCCATCTCTTGTACTAATGCTTGAATCAGGGGATCCTTCGATACATTATGAGGCGGTTGGTGCGATTGGAAATATTGTCCACTCTTCGCCAGAATATAAGATAGAGGTTCTTGAAGTTGGGGCTTTACAACCAGTTATTTCCTTACTAAGTTCAAGCAGTTTGGAGAGCCGAAGAGAGGCCGCGCTTTTGATTGGTCAATTTGCTACGACGAATGCAGATTGTAACATTCATATTGGCCAAAGAGGGGCTATAAACCCCTTAATTGCCATGCTTCATTCTCCAGAATTAGATCTATTGGAAATGTCAACTTTTGCACTTGGTAGGTTGGCACAGGACACACACAATCAAGCTGGTATTGGTTATAACGGAGGTATAACGCCTATGCTCGATCTTCTTGGCTCAGAAAATGGTGATGTTCAACACAATGCAGCTTTTGCTCTCTATGGTCTGTCCGATAACGAGGACAATGTTGCAGTTATTATTAAGGCTGGCGGTTTTCAAAAACTGCAGTATGGACATTTCAATTCTGAAGCTACTCAAGTGTGTGTACTAAATACAATAAGAAGATTGGAAGAAAAGATGGAGGGGCAAGTACTGAAACGCGTGTTATATGCTATGCGCTTTGGGGAAAAGTGTGTTCAAATATGCGTATCTCTTGCTCTTGCGCATTTATGTTCACATGATGATCGTAAAACTATTTTCATTGACAATAATGGATTGGAATTGCTGTTGGATCTTCTTCAATCCGAAAACCTAAACCAGAAGCGTGAAGCTTCAGAAGCGCTTCACACATTGGCTATGAAAGGCATATGTACCTCTATTGTTGAACCGGCTCTTACATCACTTCCCAAATATCACTTGAATAAGTTTTATATAAACAATCCTGAACATTCTGACGTCGAATTCATAATTGAAGGTAAAAGCTTTTATGCTCATAGAGTTTGTTTAGTTTATTCTTCCGAAATATTTTGTGCAATGCTTGATGGGGGTTATAAGGAAAAGGAATCCAAAACTATAGAGATTCCAAATATCAAATGGGATGTCTTTGAGTTGATAATGAGATATCTATACATTGGAGTAGTAGATATTGATTTGGATGTTGCTCCGGATCTCCTTAAAGCTGCTGATCAATATCTTCTTGATGGTCTTAAGGCTCTTTGTCAAGATACTCTTGTTGATGATATTTCTGTGGAAAATGTTTCACAAATGTATGAGATGGGAGACACTTTTAATGCTTCACCGTTAAGATATGCGTGCATAATCTTTGTCCTGGAGAATTTTGATAGTTTGAGTACTAAACCATGGTATCCTAGCTTTCTTCATTCCATTGTACCAGACATTCGTGAATTCTTCTCAATCTTAATTACCCACCCTCATTTAGATTACTCATGCTGTCGTGCGAATAGATTACTCATGATGTAG 1842 0.3909 MVVTNDGGRDYDTETYLYEMEKNCALVLSHLAFKTEYQILIVDVGALHYLVELLKTHQSPTISQELFYGLLRRAADAITCLAHENTNIRNLVRLEGGIPPLVELLEFNDAKVQRAAAAALRTLAFRNDDNKYEIVSCNAIPSLVLMLESGDPSIHYEAVGAIGNIVHSSPEYKIEVLEVGALQPVISLLSSSSLESRREAALLIGQFATTNADCNIHIGQRGAINPLIAMLHSPELDLLEMSTFALGRLAQDTHNQAGIGYNGGITPMLDLLGSENGDVQHNAAFALYGLSDNEDNVAVIIKAGGFQKLQYGHFNSEATQVCVLNTIRRLEEKMEGQVLKRVLYAMRFGEKCVQICVSLALAHLCSHDDRKTIFIDNNGLELLLDLLQSENLNQKREASEALHTLAMKGICTSIVEPALTSLPKYHLNKFYINNPEHSDVEFIIEGKSFYAHRVCLVYSSEIFCAMLDGGYKEKESKTIEIPNIKWDVFELIMRYLYIGVVDIDLDVAPDLLKAADQYLLDGLKALCQDTLVDDISVENVSQMYEMGDTFNASPLRYACIIFVLENFDSLSTKPWYPSFLHSIVPDIREFFSILITHPHLDYSCCRANRLLMM* 614
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal3g1803 613 SUPERFAMILY ARM repeat 72 408 IPR016024 -
Mal3g1803 613 Gene3D - 14 149 IPR011989 -
Mal3g1803 613 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 96 131 IPR000225 GO:0005515
Mal3g1803 613 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 138 180 IPR000225 GO:0005515
Mal3g1803 613 Gene3D - 150 317 IPR011989 -
Mal3g1803 613 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 263 305 IPR000225 GO:0005515
Mal3g1803 613 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 222 264 IPR000225 GO:0005515
Mal3g1803 613 PANTHER ARM REPEAT PROTEIN INTERACTING WITH ABF2 PROTEIN 6 603 - -
Mal3g1803 613 SMART arm_5 211 251 IPR000225 GO:0005515
Mal3g1803 613 SMART arm_5 169 209 IPR000225 GO:0005515
Mal3g1803 613 SMART arm_5 252 292 IPR000225 GO:0005515
Mal3g1803 613 SMART arm_5 85 125 IPR000225 GO:0005515
Mal3g1803 613 SMART arm_5 34 83 IPR000225 GO:0005515
Mal3g1803 613 SMART arm_5 367 407 IPR000225 GO:0005515
Mal3g1803 613 SMART arm_5 127 167 IPR000225 GO:0005515
Mal3g1803 613 Coils Coil 377 397 - -
Mal3g1803 613 ProSiteProfiles BTB domain profile. 438 505 IPR000210 GO:0005515
Mal3g1803 613 SMART BTB_4 438 535 IPR000210 GO:0005515
Mal3g1803 613 Pfam BTB/POZ domain 433 532 IPR000210 GO:0005515
Mal3g1803 613 Gene3D - 318 425 IPR011989 -
Mal3g1803 613 PANTHER ARM REPEAT PROTEIN INTERACTING WITH ABF2 6 603 IPR044282 -
Mal3g1803 613 Gene3D Potassium Channel Kv1.1; Chain A 426 573 IPR011333 -
Mal3g1803 613 Pfam Armadillo/beta-catenin-like repeat 95 124 IPR000225 GO:0005515
Mal3g1803 613 Pfam Armadillo/beta-catenin-like repeat 127 166 IPR000225 GO:0005515
Mal3g1803 613 SUPERFAMILY POZ domain 430 533 IPR011333 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal3g1803 Mal-Chr3 76301180 76303021 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal3g1803 94 290 U-box Gene Family AT5G67340 27.917 3.30e-15 77.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR TRAF Mal3g1803 BTB 1.2e-21 CL0033
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal3g1803 - - sind:105165291 692.575