Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal3g1777 ATGGCAGAAGCTTCGATGAGAAAGCCGAAGAGAAAAAACCGAAGCCTAAAAACTCAGGAAACTGAACTAGACCGGTTCGACTCACTTCCATGGAACTCTTCTGTTCCTCAACCCGATGAAAACGACGACAATGACGCTTCTTTTTCACTCTTCACTGGCTCCAATGAACTCGAAGGAGGTTTTCTTTCACTGGAGGAGATTGATGAAGCTGAGTATGGTTTAAATATTCCCGATCCTGAAAATCATGATAGGAAGCACAACTCTAAACAGGACAAGAAGCAGAAGCAAGATAGTGCTTGTAGTGGTGGAGAAGAAACGGTGAATGATGAGAGCATCAAGTCTAAAGCGAAGAAAAAGAAAAAGAAGAAGAAAAACAAGGATGCAAAAGAAGACCAGAAAGTTGAACATTCAAATACTGGAGTGGATGCTGATGTGAAAGACAATGTTGAGGAAGCGAACATTGATGAAACTGAATATTATGCATGGAACGAGTTGAGGCTTCATCCTCGTTTAATGGAAGCGATACACAAGTTGGGATTCAAGGAACCAACACCAATACAGAAAGAATGTATTCCGGCTGCTGCTCATCAAGGGAAGGATGTTATTGGGGCTGCAGAGACGGGATCTGGTAAAACACTTGCATTTGGTATTCCCATTTTTCAACGTCTCTTGGAGGAGCGTGAGAAGGCTGAAAATATGGGTGAGGTAAAGGGTGAAGAAGCTGCTGAAAGATACGCTACTACGGGCCTTTTGAGGAGTCTTATTATTGCTCCGACAAGAGAACTTGCGCTTCAGGTCACTGATCATCTGAAAGCAATAGCCAAGCATATTAATGTCAGGGTAACCGCTATTGTTGGAGGTATTTTACCAGAAAAGCAGGAAAGACTTTTAAAAGCAAGACCTGAGATTGTGGTCGCTACTCCAGGAAGGTTGTGGGAACTTATGTCATCTGGAGAAAAACATCTGGTTGAGTTACATTCATTGTCTTTCTTTGTGCTTGACGAGGCTGATCGAATGGTACAAAATGGTCATTTTAAGGAGTTACAATCAATAATTGACATGCTTCCCATGTCCAATGTCTCCAGTGAGGATAAATCTCAAGATGCACAAAATTGTGTTACAGTTTCTAGCTTCCAAAGAAAGAAAAGGCAAACTCTTGTTTTTTCAGCAACTGTCGCACTGTCTGCTGATTTTCGCAAGAAGTTAAAGCGTGGTTCAATTCAGAAAAAGCAACCATCGACAGATGGTTTGGATTCTATTGAAACTCTTTCTGAGAGAGCAGGAATGAGACCCAATGCTGCAATTATTGATCTTACCAATCCATCAATATTAGCAGCTAAGATTGAAGAGTCCTTTATTGAATGCACGGAAGATGATAAAGATGCCCATTTGTATTATATTCTTACTGCCCATGGTCAAGGCCGCACAATAGTTTTCTGTACGTCAATTGCAGCTTTGCGCCATATTTCTTCCATATTGCGCATTCTTGGCATCAATGTTTGGACTCTTCATGCTCAAATGCAACAGCGAGCGCGTTTAAAGGCAATGGACCGCTTTCGCGAAAATGACAATGGCATACTTGTTGCGACAGATGTTGCTGCTAGGGGTCTTGATATTCCTGGTGTTAGAACTGTTGTCCACTATCAGCTTCCACATTCAGCAGAGGTTTATGTTCATAGAAGTGGAAGAACAGCTAGAGCTTCTGCTGAAGGTTGTAGCATTGCTTTAATCTCCCCAAAAGATACATCAAAGTTTGCTTCATTGTGCAAGTCATTTTCAAAGGACAACTTTCAGCGGTTTCCTGTGGAGAACTCATACATGCCGGAGGTTCTAAAACGATTGTCTCTTGCACGTCAAATAGACAAGATAACTAGGAAGGATTCCCAGGAGAAGGCAGAAAAAAGCTGGTTTGATCGGAATGCTAGTTCAGTGGATTTAGTTACTGAAAATTATGACAGCGAGGAGGAACAAGTTAATAAATGTAGGCAAAAGAAAGCCAGCTCTAAGCAATTGAAGAAATTGCAGACGGAGCTCAGTATGCTGATTTCACGTCCTTTGCAATCAAAAACATTTTCACATCGATATTTAGCAGGGGCTGGTGTAACACCCCTCTTGCAAGAACAATTGCAACAATTAGCAAGGCAAAAAATAAGTGATCGTCAGGGAGGGTTCGGCAAAAAGGGAAAATTGGTTGTGATTGGTCAAGATTGTGTGGACGCACTTCACGCACTCCGGAATGCTGGTGAAGAGGTACGCATGGATATCAAGGATTCAACACGAGGACAAGGAAATATGGTGAATTCAAGGAGAAAAAGAAAAGAGGAGAAGACACGTTTGCGTGATCAGCGTAAAAAGCAGAAGAGAAATCTAAACCAGGATGATGAATAG 2388 0.4179 MAEASMRKPKRKNRSLKTQETELDRFDSLPWNSSVPQPDENDDNDASFSLFTGSNELEGGFLSLEEIDEAEYGLNIPDPENHDRKHNSKQDKKQKQDSACSGGEETVNDESIKSKAKKKKKKKKNKDAKEDQKVEHSNTGVDADVKDNVEEANIDETEYYAWNELRLHPRLMEAIHKLGFKEPTPIQKECIPAAAHQGKDVIGAAETGSGKTLAFGIPIFQRLLEEREKAENMGEVKGEEAAERYATTGLLRSLIIAPTRELALQVTDHLKAIAKHINVRVTAIVGGILPEKQERLLKARPEIVVATPGRLWELMSSGEKHLVELHSLSFFVLDEADRMVQNGHFKELQSIIDMLPMSNVSSEDKSQDAQNCVTVSSFQRKKRQTLVFSATVALSADFRKKLKRGSIQKKQPSTDGLDSIETLSERAGMRPNAAIIDLTNPSILAAKIEESFIECTEDDKDAHLYYILTAHGQGRTIVFCTSIAALRHISSILRILGINVWTLHAQMQQRARLKAMDRFRENDNGILVATDVAARGLDIPGVRTVVHYQLPHSAEVYVHRSGRTARASAEGCSIALISPKDTSKFASLCKSFSKDNFQRFPVENSYMPEVLKRLSLARQIDKITRKDSQEKAEKSWFDRNASSVDLVTENYDSEEEQVNKCRQKKASSKQLKKLQTELSMLISRPLQSKTFSHRYLAGAGVTPLLQEQLQQLARQKISDRQGGFGKKGKLVVIGQDCVDALHALRNAGEEVRMDIKDSTRGQGNMVNSRRKRKEEKTRLRDQRKKQKRNLNQDDE* 796
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal3g1777 795 CDD DEADc_DDX24 171 437 - -
Mal3g1777 795 Coils Coil 644 664 - -
Mal3g1777 795 Pfam Helicase conserved C-terminal domain 459 567 IPR001650 -
Mal3g1777 795 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 447 608 IPR001650 -
Mal3g1777 795 Coils Coil 765 793 - -
Mal3g1777 795 PANTHER ATP-DEPENDENT RNA HELICASE DDX24 83 716 - -
Mal3g1777 795 CDD SF2_C_DEAD 448 577 - -
Mal3g1777 795 MobiDBLite consensus disorder prediction 767 795 - -
Mal3g1777 795 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 107 356 IPR027417 -
Mal3g1777 795 MobiDBLite consensus disorder prediction 25 56 - -
Mal3g1777 795 Gene3D - 445 687 IPR027417 -
Mal3g1777 795 MobiDBLite consensus disorder prediction 754 795 - -
Mal3g1777 795 Pfam DEAD/DEAH box helicase 184 393 IPR011545 GO:0003676|GO:0005524
Mal3g1777 795 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 160 188 IPR014014 GO:0003724
Mal3g1777 795 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 252 584 IPR027417 -
Mal3g1777 795 MobiDBLite consensus disorder prediction 1 144 - -
Mal3g1777 795 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 332 340 IPR000629 -
Mal3g1777 795 SMART ultradead3 179 420 IPR014001 -
Mal3g1777 795 MobiDBLite consensus disorder prediction 1 24 - -
Mal3g1777 795 MobiDBLite consensus disorder prediction 75 99 - -
Mal3g1777 795 SMART helicmild6 487 568 IPR001650 -
Mal3g1777 795 PANTHER RNA HELICASE 83 716 - -
Mal3g1777 795 Coils Coil 112 132 - -
Mal3g1777 795 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 192 410 IPR014001 -
Mal3g1777 795 Gene3D - 109 406 IPR027417 -
Mal3g1777 795 MobiDBLite consensus disorder prediction 127 144 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal3g1777 Mal-Chr3 75175105 75190610 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal3g1777 161 608 Eukaryotic Initiation Factors Gene Family AT5G11200 26.582 4.42e-37 143