Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal3g1709 ATGGTTCGAATTTCCAGATTTTGGAAGACCTACACTTCTGCTAAACCTAAAATAAGGAACTCGCTGGAAATGGTTTTTGTTGATGAAAAGGGTTGTAAAATTCAGGCAACAGTACCCAGAGAGTTGATTCATTTGTTTGAAACCAAGTTTACAGAGGGTGATGTCTACGAGATCAACAATTTGTCTGTTCTTGCGGCGAATGGGTCGTATAGAACTACCACTCATGCTTACAAGCTTGTGTTGCAGGCGAACACACAAGTTAAGAAGATTGATAATGCTGTGGTTATTCTTCCTAGAATATCATTTGTTAGGTCTACTGAAATTTGTGGACATCAGCTTGATCATGACTTCTTAGTTGATGTTATCGGATTGATCACTGGAATATCTGCTGTGAAAGAATACATTAGGGATGGGAAGATCACTAAATTAATAATGCTTGAGCTCACTGATTCTAGTGGTAAATTTGATTGTGTACTGTTTGCTGAATATGTTGATCAATTACAATATTTAATGGGGAAGAACAATGAAGGATTGCATGTTATTGTGATTGAATTTGCAATGATCAAGATATTCCGAGGTTATCCCTCCATTCAAAATGCTACCAACATCTCTAGGCTTTCAATAAATCCTAAAATTGCTGAAGTGGATGCTTTTAAAAAAGAATGGTTGATGATCGGATTAGTGGGTTACCAGATGAAATCATTTGTCATATTCTCTCTTTTCTCCCAACCAAAGATGTTTTTACAACTAATGTTCTTTTAA 762 0.3596 MVRISRFWKTYTSAKPKIRNSLEMVFVDEKGCKIQATVPRELIHLFETKFTEGDVYEINNLSVLAANGSYRTTTHAYKLVLQANTQVKKIDNAVVILPRISFVRSTEICGHQLDHDFLVDVIGLITGISAVKEYIRDGKITKLIMLELTDSSGKFDCVLFAEYVDQLQYLMGKNNEGLHVIVIEFAMIKIFRGYPSIQNATNISRLSINPKIAEVDAFKKEWLMIGLVGYQMKSFVIFSLFSQPKMFLQLMFF* 254
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal3g1709 253 Gene3D - 1 89 IPR012340 -
Mal3g1709 253 Pfam Domain of unknown function DUF223 23 117 IPR003871 -
Mal3g1709 253 CDD RPA1_DBD_B_like 120 220 - -
Mal3g1709 253 Gene3D - 98 226 IPR012340 -
Mal3g1709 253 PANTHER ANIMAL RPA1 DOMAIN PROTEIN 2 228 - -
Mal3g1709 253 CDD RPA1_DBD_A_like 2 87 - -
Mal3g1709 253 SUPERFAMILY Nucleic acid-binding proteins 111 222 IPR012340 -
Mal3g1709 253 PANTHER REPLICATION FACTOR A 1, RFA1 2 228 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Mal3g1709 253 SUPERFAMILY Nucleic acid-binding proteins 2 93 IPR012340 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal3g1709 Mal-Chr3 71796757 71800355 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal3g1709 26 219 Core DNA Replication Machinery Family AT5G08020 27.451 3.92e-09 54.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal3g1709 - - mtr:MTR_8g062030 209.534