Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal3g1682 ATGATGTCGTCAACAACCCTCAAGAGTTCCCACGGTGAGGCCTTTGAGATCGATGAGGCGGCGCAGTTGCAATCAATCAAGCATACGATTGATGATTCCAACCTCTCAAACTACATGGCTACTCTAGCTGATCTCGATGTTGCTGCTGACTTGGATGAAGACTTAGAGTTGGACAGTGTATCCAATTTGCAGAGAAACATTGATATTATACACAAAGTGGAGGAGGAGGAAGCCCTTAAAAAGGGTGGTTCAGATGTCTCAGAAATCGATAACATGGTCGCTGCACCAACTATAGTGGATGGGGGGTTTGATTCTGGCTTTGGTAATATTGTAGTAGTTGATAATCTTCCCGTTGTTTCGAAGGAGAAGTTTGAGATGCTTAAAGGCGTTGTTCTTAAAATTTATAGTAAGATTGGTATTATTGATGACTTTTGGATGCCTGTTAATCCTGCGACCGAAATGTCCTTAGGCTACTGTTTCATTGAGTACAATACTCAGGAAGCAGCCGAGCGTGCTAAAGAGAAGACTCAAAGATACAAATTTGATCGTTCACACATACTTGCCGTGAGTACGTTTGATGATTTTGACCGGTTTATGAAAGTGTCCGATGAGTGGAGTCCTCCTCCAAATAAGGAATATGCTCCAGAGGAAAATCTTCAACAATGGCTAACCGATGCTAAGGCCCGAGACCAGTTTGCGATTCGTGCTGGTTCAGATACTGAGGTTTTGTGGAATGATGCTAGGAACTTAGAGCCTGATCCTATTTATAAACGTCTATATTGGACGGAGAGTTTTGTACAATGGTCTCCTTTGGGCACATATTTGGCAACAGTTCACCGTCAGGGGGTAGCAGTCTGGGGAGGTGCTACAACCTTCAACCGTCTCGCTCGTTATGCTCATCCTCAGGTGAAGCTTATTGATTTTTCACCCGGCGAGAAGTATTTCGTAACTTATAGCAGCCATGAACTAAGCAATCCTCAAGATACTATTGTTGTGATAAATATATTTGATGTGAGGACTAGTAAAGTAATGAGAGATTTTAAAGGAAGTGCTGATGATTTTGCTATTGGTGGTACCGGGGATGTCACGGGAGTGTTATGGCCTGTTTTCAAATGGAGTGGTGGAAGAGATGATAAGTACTTTGCAAGGATGGGAAAAAATGTACTTTCTGTATATGAGACAAAAACATTTTCTCTAATTGACAAAAAATCCATAAAGGTTGAAAATATAATGGATTTCAGCTGGTCACCAACTGATCCAATCATTTCACTGTTTGTGCCTGAGACAGGAGGTGGTAAACAGCCAGCTAGGGTAAGTCTTGTTCAAATCCCCAGCAAAGAAGAACTTAGGCAAAAGAAGCTTTTTAGTGTCAGTGACTGCAAGATGTACTGGCAGAGCAATGGAGATTACCTTGCTGTTAGTGTAGACCGATATACCAAAACAAAGAAAAGCACTTTCACAAGCTTTGAGCTTTTCCGTATAAAGGAACGTGACATACCCATTGAAGTTCTGGAGCTTGAGAATAAGAATGATAAGATCATTGCATTTGCTTGGGAGCCAAAGGGACATAGGTTTGCTGTTATTCATGGTGATAACCCTAAGCCCGATGTTAGTATGTACTCTATGCGGACTGCTCAGAACACTGGCCGGGTTTCAAAGCTCACTACTCTGAATGGCAAGTCGGCAAATGCTTTGTTTTGGTCACCTGCAGGCCGCTTCATTGTACTAGCTGGGTTGAAAGGCTTCAATGGAGCGTTGGAATTTTACAATGTTGATGACCTTGAAACCATGGCTACTGCTGAACATTTTATGGCAACTGATGTTGAATGGGATCCAACTGGAAGGTATGTTGCAACTGCTGTGACTTCGGTTCATGAAATGGAAAATGGATTCAATATATGGTCTTTCAATGGCAAACATCTTTATCGGATATTAAAGGATAACTTCTTTCAGTTCTCATGGAGACCAAGGCCACCATCTTTCTTGACCCCTGAGAAAGAGGAAGAGATTGCAAAGAACTTGAAGAAGTTTAGTAAAAAATATGAAGTAGAAGATCAAGATGTTTCATTGTTGCTGAGTGAGCAGGAGCGTGAGAAGTGTAGAATTTTGAAAGAAAATTGGGACAAGTGGGTCAATGAATGGAAGCTGATGGATGAACAAGAGAAGTTAGAGAGGCAAAATCTGACTGGCGGAGAAGCGAGTGACGAGGAAGAGGAATACAAGGCAAAGGACATTGAAGTCGAGGAAGTAGTCGAAGTTACCGAAGAAATCCTTTGCTGA 2280 0.4197 MMSSTTLKSSHGEAFEIDEAAQLQSIKHTIDDSNLSNYMATLADLDVAADLDEDLELDSVSNLQRNIDIIHKVEEEEALKKGGSDVSEIDNMVAAPTIVDGGFDSGFGNIVVVDNLPVVSKEKFEMLKGVVLKIYSKIGIIDDFWMPVNPATEMSLGYCFIEYNTQEAAERAKEKTQRYKFDRSHILAVSTFDDFDRFMKVSDEWSPPPNKEYAPEENLQQWLTDAKARDQFAIRAGSDTEVLWNDARNLEPDPIYKRLYWTESFVQWSPLGTYLATVHRQGVAVWGGATTFNRLARYAHPQVKLIDFSPGEKYFVTYSSHELSNPQDTIVVINIFDVRTSKVMRDFKGSADDFAIGGTGDVTGVLWPVFKWSGGRDDKYFARMGKNVLSVYETKTFSLIDKKSIKVENIMDFSWSPTDPIISLFVPETGGGKQPARVSLVQIPSKEELRQKKLFSVSDCKMYWQSNGDYLAVSVDRYTKTKKSTFTSFELFRIKERDIPIEVLELENKNDKIIAFAWEPKGHRFAVIHGDNPKPDVSMYSMRTAQNTGRVSKLTTLNGKSANALFWSPAGRFIVLAGLKGFNGALEFYNVDDLETMATAEHFMATDVEWDPTGRYVATAVTSVHEMENGFNIWSFNGKHLYRILKDNFFQFSWRPRPPSFLTPEKEEEIAKNLKKFSKKYEVEDQDVSLLLSEQEREKCRILKENWDKWVNEWKLMDEQEKLERQNLTGGEASDEEEEYKAKDIEVEEVVEVTEEILC* 760
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal3g1682 759 Pfam Eukaryotic translation initiation factor eIF2A 452 652 IPR013979 -
Mal3g1682 759 SMART rrm1_1 110 190 IPR000504 GO:0003723
Mal3g1682 759 SUPERFAMILY DPP6 N-terminal domain-like 264 646 - -
Mal3g1682 759 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 109 194 IPR000504 GO:0003723
Mal3g1682 759 Hamap Eukaryotic translation initiation factor 3 subunit B [EIF3B]. 98 759 IPR011400 GO:0003723|GO:0003743|GO:0005852|GO:0006413|GO:0031369
Mal3g1682 759 PANTHER BNACNNG51870D PROTEIN 102 758 - -
Mal3g1682 759 Gene3D - 233 429 IPR015943 GO:0005515
Mal3g1682 759 Gene3D - 437 669 IPR015943 GO:0005515
Mal3g1682 759 CDD RRM_eIF3B 108 189 IPR034363 -
Mal3g1682 759 Gene3D - 104 202 IPR012677 -
Mal3g1682 759 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 EIF3 -RELATED 102 758 IPR011400 GO:0003723|GO:0003743|GO:0005852|GO:0006413|GO:0031369
Mal3g1682 759 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 132 184 IPR000504 GO:0003723
Mal3g1682 759 PIRSF Transl_init_eIF3b 56 759 IPR011400 GO:0003723|GO:0003743|GO:0005852|GO:0006413|GO:0031369
Mal3g1682 759 SUPERFAMILY RNA-binding domain, RBD 108 187 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal3g1682 Mal-Chr3 71444601 71448366 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal3g1682 103 758 Eukaryotic Initiation Factors Gene Family AT5G27640 73.333 0.0 1037
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal3g1682 K03253 - gmx:100779711 1130.93