Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal3g1641 ATGGTGTTGGCCGATGAAAAGTCCAATTACATACATGCTTCTATACCAAGCAAATTTGCACATGGTTTTCGAAAAACACTGCAAGAGGGAAAAATTTACGTCATCAGCCAATTTGATGTGATGAGAAATAAACAGAAATATGCTGTGACTGATTTTGATGATGGAAAAATCCCTTTGTATGTTTTTGAGTTTGTGGATTTTGAAAAATTTGAAGAACGAGTTGACAAGGAAGTTTTGACAGATGTCATTGGAGTTATCACTGATGTAAATCCAATTGAAGAGGTTACCACTGTTAATGGTACAGTTGACAGGGTGAAACTTGAATTGAAGGATATAAGGGGAAACACCGTGAAAGTCACGTTGTGGGATGAATATGCTACAATATTTGAAGAGACGCTCAATAACAACAAGCATGACGGTCTTACCCCAAATGTTGCAGTAATCACTTCCACTGCCATTTACATCAACATAGACATTCCAAATGCAAATGAGCTCATTCCATCTTTTGGTGAATCTGGGGAAATGAGTCTCACACTTTCTACTATCCACTCCAAAATGAACAAGAACAGAACCATATCAGAGCTTTTATCTTTGGCACTGTCCGGGAGTAATTTGGATGCTGTGTATTATTGTGCAGCAACAATAACTGACATAGGGGATAGATGGTACTATGTTTCTTGCCCTAAATGTAAAAAGGGAGCTTCTGCGACTGAAACAAATTTTGATTGTGAACATTGTTCAGAAAAAATAGAATATCCGATAAACAGGTATCGTTTGGAGCTTGATGTTAAAGACTCGACAGATTCCACTATATTTGTATTGTTTGGTGAAGTTGCTGAACAAGTGGTACAGATGAAACTAAGTGACTTGATCTCAACTTTGGAAAATGAAAATGAGGATAGCTCAACAGTGCCTCATCAACTCAACAAAATCATTGGCTCCACTCATGTATTCCAAGTTAGTATGAAAAATTACTATGGGGGTCGTGGGAGACAAAGTTTCACTGTTGATAGGATTGTGAAGCCGAAAGTGAAGGTTGAGAAAGAAGACAAATCTGAAAATAATGGTGCTGCATCATGTGGTTTTTCCAATCCACGTACTCCAAAATTACCACAAAAGAGAAGGTTAAGTTTGCAAGAGGATGATGAATCATGCAATGTGGAGCAAATCCAAGATCTGGAAGATTTGGAGGCCTGA 1197 0.3793 MVLADEKSNYIHASIPSKFAHGFRKTLQEGKIYVISQFDVMRNKQKYAVTDFDDGKIPLYVFEFVDFEKFEERVDKEVLTDVIGVITDVNPIEEVTTVNGTVDRVKLELKDIRGNTVKVTLWDEYATIFEETLNNNKHDGLTPNVAVITSTAIYINIDIPNANELIPSFGESGEMSLTLSTIHSKMNKNRTISELLSLALSGSNLDAVYYCAATITDIGDRWYYVSCPKCKKGASATETNFDCEHCSEKIEYPINRYRLELDVKDSTDSTIFVLFGEVAEQVVQMKLSDLISTLENENEDSSTVPHQLNKIIGSTHVFQVSMKNYYGGRGRQSFTVDRIVKPKVKVEKEDKSENNGAASCGFSNPRTPKLPQKRRLSLQEDDESCNVEQIQDLEDLEA* 399
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal3g1641 398 PANTHER BNAC01G35430D PROTEIN 191 360 - -
Mal3g1641 398 CDD RPA1_DBD_B_like 81 166 - -
Mal3g1641 398 Gene3D - 1 56 IPR012340 -
Mal3g1641 398 SUPERFAMILY Nucleic acid-binding proteins 189 347 IPR012340 -
Mal3g1641 398 Pfam Replication factor-A C terminal domain 212 347 IPR013955 -
Mal3g1641 398 PANTHER REPLICATION FACTOR A 1, RFA1 1 150 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Mal3g1641 398 Gene3D - 177 353 IPR012340 -
Mal3g1641 398 MobiDBLite consensus disorder prediction 346 398 - -
Mal3g1641 398 PANTHER REPLICATION FACTOR A 1, RFA1 191 360 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Mal3g1641 398 CDD RPA1_DBD_C 192 354 IPR013955 -
Mal3g1641 398 SUPERFAMILY Nucleic acid-binding proteins 62 171 IPR012340 -
Mal3g1641 398 Gene3D - 57 176 IPR012340 -
Mal3g1641 398 PANTHER BNAC01G35430D PROTEIN 1 150 - -
Mal3g1641 398 CDD RPA1_DBD_A_like 1 52 - -
Mal3g1641 398 Pfam Replication protein A OB domain 73 131 IPR031657 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal3g1641 Mal-Chr3 70117197 70120005 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal3g1641 3 348 Core DNA Replication Machinery Family AT4G19130 24.685 3.72e-20 90.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal3g1641 - - mtr:MTR_4g070090 351.673