Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal3g1605 ATGGAAAATCAATTCTTTTCAAACACTAGTGTTCCACCACAACTTCATTTTGAACAATCACAACCATCTTCAATGCCTACATGGCAATCACTTTCATCAGAACAACAAAACCAAGATTGTTTCTACACACCAGATCAATGTGTTCATCAATTTGATTCAGCACTTAGTTCAATGGTATCATCACCTGCAGCATCAAATTCCAACATGTCAAATGACAATTTTGTCATCAGAGAATTGATTGGTAAATTAGGAAACATTGGTAATTGTTCTGATGAGATCTCTCAAACTTTGGTTGCTGCAAATTCATACATCAATAACAATAACAATACTTCATGTTACAACACCCCTTTGAATTCTCCACCTAAATTGAACATCTCAACAATGGCCATGAATTCAACTGTTGCAGAATTCTCAACTGATCCTGGTTTTGCAGAAAGAGCTGCAAAATTCTCTTGCTTTGGAAGTAGAAGTTTCAATGGAAGAACATCACAATTGAGTCAAAGTCAAAGATCTACTCCATTGATTGAAAATGGAAAACTCTCTAGAGTTTCAAGTAGTCCATCATTGAAAGAACTTGGATCTCAAGAGAATATGAATTGTTCTTCTCAATTGAAGGATCAAATTGAAGTTAACAATTCTCAAGAAGAATCAACAATCTCTGAAAATGGTCTGAAACCTTCTCCTTATATGAATTCAAGGAAAAGAAAAGCTTCTACCAAAGGAAAAAACAAAGAAACTTCAACTTCTAGTAACCCTCCAATGGCTTGTGAAGCTGTTGAAGACTCAAATGCAAAGCGCATGAAAACAAATGAAGGTGAAAAAATTGAAAATGGTAAAGTGAAAGCAGAGGAAGAGTCAAAAGGAGGTACAAATAGTAATAATGGAGGTGATGAAAAACAGAAAAAGAGTAACTCAAAACCTCCGGAGGCTCCAAAGGATTACATTCATGTCAGAGCAAGAAGAGGTCAAGCTACTGATAGCCATAGTCTTGCAGAAAGAGTTAGGAGGGAGAAAATCAGTGAAAGGATGAAGCTTCTACAAGATCTTGTCCCTGGTTGCAATAAGGTCACTGGAAAAGCACTCATGCTTGATGAAATTATAAACTATGTGCAATCATTGCAGCGTCAAGTTGAGTTCCTATCAATGAAATTGGCCACTGTTAACACAAGGGTGGATTTTAGTATTGAGAGTCTAATCTCAAAAGATATTTTTCAATCAAATAATTCTCTGTCACACCCAATATTCCCATTAGATTCCTCAACACCATCCTATTATGGGCAACAACACCAGCAAAACCCAGCAATTCACAGTAACATTTCTAATGGAACTATGACCCACAACTCAGTGGACCCATTAGATGGTGGTTTATGCCAAAATCTTGGCATGCACTTATCATCACTAAGTGGATTTAATGAAGCTGGCTCTCAGTATCCATTAACATTCTCTGAGGATGACCTCCACACAATAGTTCAGATGGGATTTGGACAAACTGACAATAGAAAAACACCAATACAATTTCAGAATTTGAATGGCACAAATCAACTACCCCTATGA 1554 0.3662 MENQFFSNTSVPPQLHFEQSQPSSMPTWQSLSSEQQNQDCFYTPDQCVHQFDSALSSMVSSPAASNSNMSNDNFVIRELIGKLGNIGNCSDEISQTLVAANSYINNNNNTSCYNTPLNSPPKLNISTMAMNSTVAEFSTDPGFAERAAKFSCFGSRSFNGRTSQLSQSQRSTPLIENGKLSRVSSSPSLKELGSQENMNCSSQLKDQIEVNNSQEESTISENGLKPSPYMNSRKRKASTKGKNKETSTSSNPPMACEAVEDSNAKRMKTNEGEKIENGKVKAEEESKGGTNSNNGGDEKQKKSNSKPPEAPKDYIHVRARRGQATDSHSLAERVRREKISERMKLLQDLVPGCNKVTGKALMLDEIINYVQSLQRQVEFLSMKLATVNTRVDFSIESLISKDIFQSNNSLSHPIFPLDSSTPSYYGQQHQQNPAIHSNISNGTMTHNSVDPLDGGLCQNLGMHLSSLSGFNEAGSQYPLTFSEDDLHTIVQMGFGQTDNRKTPIQFQNLNGTNQLPL* 518
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal3g1605 517 MobiDBLite consensus disorder prediction 1 30 - -
Mal3g1605 517 SMART finulus 329 379 IPR011598 GO:0046983
Mal3g1605 517 CDD bHLH_AtBPE_like 313 398 - -
Mal3g1605 517 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 321 392 IPR036638 GO:0046983
Mal3g1605 517 MobiDBLite consensus disorder prediction 299 313 - -
Mal3g1605 517 Gene3D - 320 394 IPR036638 GO:0046983
Mal3g1605 517 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 323 373 IPR011598 GO:0046983
Mal3g1605 517 Coils Coil 370 390 - -
Mal3g1605 517 MobiDBLite consensus disorder prediction 261 286 - -
Mal3g1605 517 PANTHER BHLH TRANSCRIPTION FACTOR 27 513 - -
Mal3g1605 517 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 27 513 IPR024097 GO:0006355
Mal3g1605 517 Pfam Helix-loop-helix DNA-binding domain 327 374 IPR011598 GO:0046983
Mal3g1605 517 MobiDBLite consensus disorder prediction 160 313 - -
Mal3g1605 517 MobiDBLite consensus disorder prediction 160 227 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal3g1605 Mal-Chr3 68435862 68438776 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal3g1605 1 483 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G07340 44.444 5.44e-111 335
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Mal3g1605 HLH 4e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal3g1605 - - mtr:MTR_7g053410 931.013