Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal3g1595 ATGGCAAAACCAGGGGTGTTAGATTCTGATCCAGAGGTTATGGTGAAGAAAGCCTTAGAGCTGAAGAAGGAGTTGAAGAGGCTTGTTAAGTCCATTGTTGATGATGAAGATATAAGCATTGAAGCTATTGATAAAGCTAAAGAAACTCTTTGTGTTCTTAAGGATTTGAAGCTAAGAAAGAAATCTCAATCTTCAATGTCTTTTAAGATAAACAAGAATGTTACTTTCCCAGATGAATTCAAATGTCCACTTTCCAAGGAATTGATGAGAGATCCTGTCATTGTTGCTTCTGGTCAGACATATGATAGACCTTTCATTCAAAAATGGTTCAATGCTGGAAATAGGACATGTCCTCAAACTCATCAAGTTCTCTCACACACTCTCCTTACTCCAAATCACCTTATAAGGGAAATGATAGAAAAATGGTCTAAAAATCAAGGACTTGAATTGTGCAATGCTATTAGTTACATTAGTGATGAAGGTGCTAAAGAAGCTGATCAGAATCACTTTTTATGTTTGCTTGAGAAAATGTCTTCAAATCTTTGTGATCAGAAAGAAGCTGCAAAACAACTTAGATTGTTGACAAAGAAGCATCCTTGTTTTCGAGTACTTTTCTGCGATTTTGAAAACGCAATTCCTCAATTGCTTAAGCCAATTAGCGAAGGAGATGATAGTATTAACCATGATCTTCAAGAAGATGTGATCACAACACTTCTCAATATCTCAATTCATGACAACAACAAAAAACTAGTAGCTGAAACTCCAATGGTAATTCCAATCCTTATGAAGGCATTGAGACGTGGAACAATCGAAACACGAGCAAATGCTGCGGCAACCCTTTTCACATTATCAGCACTAGACTCAAACAAAGAACTTATAGGAAAATCCAACGCCTTAAAACCGCTTATCGACCTATTGGAAGAAGGGAATCCCTTAGCTATGAAGGATGTTGCTTCAGCAATATTCACTTTATGTATGATGCATGACAACAAAGCAAGAGCAGTGAAAGACGGAGCGGTTAGAGTGATTATGGCAAAGATGAAAAACCGAGTTCACGTTGATGAATCACTAGCTATCCTTGCGCTACTTTCGACTCATCAAACGGCTGTCCTCGAAATGGCAGAGCTTGGAGCTGTTCCTTGTTTGCTAAGCATTATGCGAGAGAGCTCGTGTGAACGCAATAAGGAGAATTGTGTTGCGATCCTTCAAACTATATGTCTTTATGATAGATCCAAGTTGAGGGAAATAAAGGAAGAGGAGAATAGTCACAGAACAATTTCTGAACTTGCAAAAAGTGGAACTTCAAGGGCTAAGAGAAAAGCTAGTGGAATTCTTGAGAGATTGCATAGGGTTGTTAATATCACACACACTGCATGA 1377 0.3813 MAKPGVLDSDPEVMVKKALELKKELKRLVKSIVDDEDISIEAIDKAKETLCVLKDLKLRKKSQSSMSFKINKNVTFPDEFKCPLSKELMRDPVIVASGQTYDRPFIQKWFNAGNRTCPQTHQVLSHTLLTPNHLIREMIEKWSKNQGLELCNAISYISDEGAKEADQNHFLCLLEKMSSNLCDQKEAAKQLRLLTKKHPCFRVLFCDFENAIPQLLKPISEGDDSINHDLQEDVITTLLNISIHDNNKKLVAETPMVIPILMKALRRGTIETRANAAATLFTLSALDSNKELIGKSNALKPLIDLLEEGNPLAMKDVASAIFTLCMMHDNKARAVKDGAVRVIMAKMKNRVHVDESLAILALLSTHQTAVLEMAELGAVPCLLSIMRESSCERNKENCVAILQTICLYDRSKLREIKEEENSHRTISELAKSGTSRAKRKASGILERLHRVVNITHTA* 459
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal3g1595 458 ProSiteProfiles U-box domain profile. 75 149 IPR003613 GO:0004842|GO:0016567
Mal3g1595 458 SMART arm_5 366 407 IPR000225 GO:0005515
Mal3g1595 458 SMART arm_5 286 326 IPR000225 GO:0005515
Mal3g1595 458 SMART arm_5 244 285 IPR000225 GO:0005515
Mal3g1595 458 SMART Ubox_2 79 142 IPR003613 GO:0004842|GO:0016567
Mal3g1595 458 Pfam U-box domain 77 145 IPR003613 GO:0004842|GO:0016567
Mal3g1595 458 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 73 148 IPR013083 -
Mal3g1595 458 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 9 5 456 - -
Mal3g1595 458 PANTHER U BOX DOMAIN-CONTAINING 5 456 - -
Mal3g1595 458 CDD RING-Ubox_PUB 80 122 IPR045210 -
Mal3g1595 458 Gene3D - 149 453 IPR011989 -
Mal3g1595 458 SUPERFAMILY RING/U-box 75 152 - -
Mal3g1595 458 SUPERFAMILY ARM repeat 170 448 IPR016024 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal3g1595 Mal-Chr3 68127212 68130055 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal3g1595 138 458 U-box Gene Family AT3G07360 60.429 1.59e-127 371
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal3g1595 - - gmx:100777031 711.064