Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal3g1543 ATGGATGGGTCTATTTGGTCCATTTTCATGCATGCTGATGGGGAAGATTGGTTCCTTATGATTTTAGGTACCATTGGAGCAATTGGTGAAGGCTTCAGCAGTCCTTTGATTTTGTATATTAGTAGCCACATGATCAACAATATTGGGAGTTCATCTACCATTGATGGAGACACTTTCGTCCATAACATCAACAAGAATGCAATGGTTTGGTTGTATTTGGCTTGTGCAACTTTTCTTTTTTGCTTTCTCGAGGGTTATTGTTGGACAAGGACAAGTGGAAGACAAGCTGCAAAAATGAGATACAGGTACTTAAAAGCAGTACTTAGACAAGAAGTTGCTTATTTTGATTTGCAGGTTACAAGTACCTCAGAAGTCATCACTAGTGTCTCCAATGACACTCTTATAATTCAAGATGTTCTTAGTGAAAAGGTTCCAAATTTCTTGATGAACATTTCTTTGTTCATTGGGAGCTACATAGTGGCATTTATAATGCTATGGAGATTGGCCATCGTAGCCTTTCCATTTTTGATTCTTCTGGTGATCCCTGGAATAATCTATTGCAAGACTTTGATGGGTTTATCCAGCAAAATTAGGGAAGAATATAATAAGGCCGGTACAGTTGCAGAACAAACGATATCTTCGATCAGAACCGTTTATTCATTTGTGGGGGAAAACAAATCCATGTCTGCTTTCTCTAATGCTCTACAAGGGACTATTAATTTGGGTTTAAAACAAGGATTAGCAAAAGGTTTAGCCATTGGAAGCAATGGTTTTGTCTTTGCCATTTGGTCTTTCATGTGTGTTTATGGTAGCAAATTGGTCATGTACCATGGTGCTAAAGGAGGGACAGTTTTTGCTGTTGGAGCATCCATAACTCTTGGTGGATTAGGATTAGGAGCAAGTTTATTAAACATAAAGTATTTCTCAGAAGCATGTTCAGCTGGTGAACGAATAAAGAGAGTAATAAAAAGAGTTCCCAAGATAGATTCCAACAATACAACAGGAGAGATATTAAACAATGTTTTTGGGGAAGTAGAATTTGATCATGTAGAATTTGCATATCCAACAAGACCAGAAACCATTATCCTAAAAAACTTATGTCTCAAGATTCCAGCTGGGAAAACATTGGCATTGGTTGGTGAGAGTGGTTCAGGGAAATCAACAGTAATATCTTTATTGCAAAGATTTTATGATCCAATTGGTGGTGAGATACTTCTTGATGGAGTTGCTATTCATAAGTTGCATATTAAATGGCTTAGGTCAATGATGGGTTTGGTTAGTCAAGAACCTGCTTTATTTGCAACAAGCATTAAAGAGAATATAATTTTTGGTAAAGAAGATGCTACTGAAGATGAGATTGTTGAGGCTGCCAAAATTTGTAATGCTCATGATTTCATTTCTTTGCTTCCTCAAGGTTACAATACTCAGGTAGGAGAAAGAGGGATTCAATTATCAGGTGGACAAAAACAAAGGATAGCAATTGCTCGAGCAATAATTAAGAAACCACAAATCTTTCTTTTGGATGAAGCAACGAGTGCATTAGATACTGAGTCAGAACGAATGGTTCAACAAGCACTCGACAATGCAACAACCGGTTGCACTTCTATCATAATCGCCCACCGCCTCTCCACAATCCAAAATGCCGACATCATAGCCGTGATGCACGGTGGAGAAGTTACCGAGATTGGCTCACAGGAGGAACTTCTCCAAAATGAAAATGGCCTCTACTCCTCCCTTGTCCGCCTTCAACAAACCGACAAATCCACAACAGAATCAGAAGAAACCGTTACAACTACTTTCACCAATTTAGACACAAATATCAATTGTCTAGTAGACCCTACTAGTTCAGCTGAAGATAACATTAGTGTCCGTATGCATGATAGTAATAATAACAACAAAAATGAAGAAGACGATAAGCAGCTACATAATACGGTGTCTTTTTGGAGACTACTTTTATTGAATGCTCCAGAATGGAAGCAAGCAGTTTTGGGGTGTTTGAATGCAATGGTGTTTGGCGCAGTGCAACCTGTTTATGCATTTGTAATGGGGTCAATGATATCTGTTTATTTTCATACGGATTATGAGGAGATAAAAAACAAGACTAGAGGCTATTCACTTCGCTTTTTGGGTCTCTTTGTGATAACTTTGGTGGTTAATGTTGGACAACATTATAACTTTGCTTATATGGGAGAGTACTTGACTAAACGCGTGAGGGAGAGCATGCTTTCGAAAATACTCACTTTTGAAGTTGCTTGGTTTGATCGCGACGAAAACTCAAGTGGTGCTGTTTGTTCTCGACTTGCCAATGATGCTAATGTGGTGAGGTCATTAGTTGGTGATAGAATGGCTTTGTTGGTACAAACTTTCTCAGCTGTAGTAACATCATACACAATGGGTCTAGTCATTTCATGGAGGCTCACAATTGTTATGATAGCTATTCAACCAGTTATAATAGCTTGCTTTTACACAAGAAGTGTACTCCTTAAAAGCATGTCAACCAAGTCCAATAAGGCTCAACAACAAAGTAGCAAGCTAGCTGCTGAAGCAGTTTCAAATCTTAGAACCATCACTGCATTTTCTTCTCAAGATAGAATACTCAAAATGCTTGAAACGGCCCAACAAGGCCCAATTCAAGAGAATTTTCGACAGTCGTGGTTTGCTGGTATTGGACTTGGCCTTTCACAATTCGTCGCATCTTGTTCTTGGGCCTTGGATTATTGGTACGGCGTCAAGCTTATTGCTGATGGGAACATAACAAGGAAAGCATTGTTTGAGAGCTTTATGGTTGTGGTGAGTACGGGGCGGGTTATAGCTGAGGCTGGAAGCATGACTAAAGATATTGCCAAAGGCGCTGATGTCGTGGGCTCGATTTTTGTCATCCTAGATCGGTGTACAAAAATTGAGCCAGACAACTCTGATGGGTTTAAGCCCGAGACTTTAATGGGTCAAATAGAATTTTGCGACGTGCATTTTGCATACCCCTCTAGGCCTAATGTGATTATCTTTCAAGATTTTTCAATTAAAATTGAAGCGGGCAAATCAACAGCATTAGTGGGCCAAAGTGGGTCTGGAAAGTCAACCATCATAGGATTAATAGAGAGATTCTATGACCCTCTAAAAGGAAGTGTGACAATAGATGGTATGAACATAAAATCATATAACCTAAAGTCACTAAGAAAACACATAGCACTTGTGAGCCAAGAGCCAACATTAATAAATGGAACCATAAGAGACAACATTGCATATGGAACACCATGTGACAACATTGATGAAATTGAGATCATAGAGGCAGCAAGAGTAGCCAATGCTCATGATTTCATAGCTAGCTTAAAAGATGGGTATGAGACATGGTGTGGGGACAAAGGGGTGCAACTTTCAGGGGGTCAAAAACAGAGGATAGCAATAGCTAGAGCTATGTTGAAGAATCCAAAGGTGTTGCTACTTGATGAGGCAACAAGTGCACTAGATAACAATTCAGAAAAGGTAGTGCAAGATGCATTGAATAAGGTGATGGTTGGAAGGACTAGTGTGGTTGTGGCACATAGGTTGAGTACCATACACAATTGTGATGTTATTGCCGTTTTAGATAAAGGGAAAATGGTTGAGATTGGAACTCACAAAGCATTGTTGGATAAAGGACCTTGTGGTGCTTATTACTCTTTGGTACGTCTTCAAACTAAACATGCATCCGTAACCAAAGGCACTTCTAATTAA 3714 0.392 MDGSIWSIFMHADGEDWFLMILGTIGAIGEGFSSPLILYISSHMINNIGSSSTIDGDTFVHNINKNAMVWLYLACATFLFCFLEGYCWTRTSGRQAAKMRYRYLKAVLRQEVAYFDLQVTSTSEVITSVSNDTLIIQDVLSEKVPNFLMNISLFIGSYIVAFIMLWRLAIVAFPFLILLVIPGIIYCKTLMGLSSKIREEYNKAGTVAEQTISSIRTVYSFVGENKSMSAFSNALQGTINLGLKQGLAKGLAIGSNGFVFAIWSFMCVYGSKLVMYHGAKGGTVFAVGASITLGGLGLGASLLNIKYFSEACSAGERIKRVIKRVPKIDSNNTTGEILNNVFGEVEFDHVEFAYPTRPETIILKNLCLKIPAGKTLALVGESGSGKSTVISLLQRFYDPIGGEILLDGVAIHKLHIKWLRSMMGLVSQEPALFATSIKENIIFGKEDATEDEIVEAAKICNAHDFISLLPQGYNTQVGERGIQLSGGQKQRIAIARAIIKKPQIFLLDEATSALDTESERMVQQALDNATTGCTSIIIAHRLSTIQNADIIAVMHGGEVTEIGSQEELLQNENGLYSSLVRLQQTDKSTTESEETVTTTFTNLDTNINCLVDPTSSAEDNISVRMHDSNNNNKNEEDDKQLHNTVSFWRLLLLNAPEWKQAVLGCLNAMVFGAVQPVYAFVMGSMISVYFHTDYEEIKNKTRGYSLRFLGLFVITLVVNVGQHYNFAYMGEYLTKRVRESMLSKILTFEVAWFDRDENSSGAVCSRLANDANVVRSLVGDRMALLVQTFSAVVTSYTMGLVISWRLTIVMIAIQPVIIACFYTRSVLLKSMSTKSNKAQQQSSKLAAEAVSNLRTITAFSSQDRILKMLETAQQGPIQENFRQSWFAGIGLGLSQFVASCSWALDYWYGVKLIADGNITRKALFESFMVVVSTGRVIAEAGSMTKDIAKGADVVGSIFVILDRCTKIEPDNSDGFKPETLMGQIEFCDVHFAYPSRPNVIIFQDFSIKIEAGKSTALVGQSGSGKSTIIGLIERFYDPLKGSVTIDGMNIKSYNLKSLRKHIALVSQEPTLINGTIRDNIAYGTPCDNIDEIEIIEAARVANAHDFIASLKDGYETWCGDKGVQLSGGQKQRIAIARAMLKNPKVLLLDEATSALDNNSEKVVQDALNKVMVGRTSVVVAHRLSTIHNCDVIAVLDKGKMVEIGTHKALLDKGPCGAYYSLVRLQTKHASVTKGTSN* 1238
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal3g1543 1237 Pfam ABC transporter transmembrane region 20 291 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Mal3g1543 1237 Pfam ABC transporter transmembrane region 664 932 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Mal3g1543 1237 SMART AAA_5 1011 1205 IPR003593 -
Mal3g1543 1237 SMART AAA_5 372 575 IPR003593 -
Mal3g1543 1237 CDD ABC_MTABC3_MDL1_MDL2 345 583 - -
Mal3g1543 1237 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 21 310 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Mal3g1543 1237 CDD ABC_6TM_Pgp_ABCB1_D1_like 20 318 - -
Mal3g1543 1237 ProSitePatterns ABC transporters family signature. 484 498 IPR017871 GO:0005524
Mal3g1543 1237 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 668 949 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Mal3g1543 1237 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 338 583 IPR027417 -
Mal3g1543 1237 CDD ABC_MTABC3_MDL1_MDL2 984 1225 - -
Mal3g1543 1237 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 345 581 IPR003439 GO:0005524
Mal3g1543 1237 CDD ABC_6TM_Pgp_ABCB1_D2_like 651 967 - -
Mal3g1543 1237 ProSitePatterns ABC transporters family signature. 1125 1139 IPR017871 GO:0005524
Mal3g1543 1237 Gene3D - 335 584 IPR027417 -
Mal3g1543 1237 Gene3D - 974 1234 IPR027417 -
Mal3g1543 1237 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 974 1225 IPR027417 -
Mal3g1543 1237 SUPERFAMILY ABC transporter transmembrane region 15 326 IPR036640 GO:0005524|GO:0016021
Mal3g1543 1237 Gene3D ABC transporter type 1, transmembrane domain 7 949 IPR036640 GO:0005524|GO:0016021
Mal3g1543 1237 Pfam ABC transporter 363 512 IPR003439 GO:0005524
Mal3g1543 1237 PANTHER ABC TRANSPORTER B FAMILY PROTEIN 10 1229 - -
Mal3g1543 1237 SUPERFAMILY ABC transporter transmembrane region 649 968 IPR036640 GO:0005524|GO:0016021
Mal3g1543 1237 Pfam ABC transporter 1003 1153 IPR003439 GO:0005524
Mal3g1543 1237 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 984 1222 IPR003439 GO:0005524
Mal3g1543 1237 PANTHER ATP-BINDING CASSETTE SUB-FAMILY B 10 1229 IPR039421 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal3g1543 Mal-Chr3 66637335 66646890 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal3g1543 4 584 Calmodulin-binding Proteins AT2G36910 35.788 5.30e-107 365