Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal3g1542 ATGGGTGGTGGGGATCATAAAAAGGGTATAGATATTGTTAATAAGAAGGAAAATAAGAACATGAATGGGTCTATTTGGTCCATTTTCATGCATGCTGATGCAGAAGATTGGCTCCTTATGATTTTTGGGACCATTGGAGCAATTGGTGAAGGCTTCAACACTCCTTTGATATTGTATTATACTAGCCACATGATTAACAATATTGGGAGTTCATTTACCATGGATGGAAATACATTCATCCATAACATCAATAAGAATGCAGTAGCTTGGTTTTATTTGGCTTGTGCATCTTTTGTTGTTTGCTTCCTTGAGGGTTATTGTTGGACAAGGACAAGTGGAAGACAAGCTGCAAGAATGAGATGCAAGTATCTCAAAGCAGTTCTTAGACAAGACGTTGCTTACTTTGATTTGCAAGTCACAAGCACTTCTGAGATCATCACTAGTGTCTCCAATGATACTCTTATAATTCAAGATGTTCTGAGTGAGAAGGTTCCAAATTTCTTGATGAACATTTCTTTGTTCATTGGGAGCTACATAGTGGCATTTATAATGCTATGGAGATTGGCCATTGTAGCCTTTCCATTTTTGATTCTTCTGGTGATCCCTGGAATAATCTATTGCAAGACTTTGATGGGTTTATCCAGCAAAATTAGGGAAGAATATAATAAGGCCGGTACAGTTGCAGAACAAACGATATCTTCGATCAGAACCGTTTATTCATTTGTGGGGGAAAACAAATCAATGGCTGCTTTCTCTAATGCTCTACAAGGGACTATTAATTTGGGTTTAAAACAAGGATTAGCAAAAGGTTTAGCCATTGGAAGCAATGGTTTTGTCTTTGGCATTTGGTCTTTCATGTGTGTTTATGGTAGCAAATTGGTCATGTACCATGGTGCTAAAGGAGGGACAGTTTTTGCAGTAGGAGCAAGTATAGCTGTTGGTGGATTAGGATTAGGAGCAAGTTTTTCCAACCTAAAATATTTCTCAGAAGCATGTTCAGCTGGTGAACGAATAAAGAAAGTAATAGAAAGAATTCCCAAGATAGATTCCAACAATACAACAGGAGAGATATTAAACAATGTTTTTGGAGAAGTGGAATTTGACCATGTAGAATTTGCATATCCAACAAGACCAGAAACCACTATCCTTAAAAACTTGTGTCTCAAAATTCCAGCAGGAAAAACATTGGCATTGGTTGGTGAGAGTGGTTCAGGGAAATCAACAGTGATATCTTTATTGCAAAGATTTTATGATCCAATTGGTGGTGAGATACTTCTTGACGGAGTTGCTATTCATAAATTGCATATTAAATGGCTTAGGTCAATGATGGGTTTGGTTAGTCAAGAACCTGCTTTATTTGCAACAAGCATTAAAGAGAATATAATTTTTGGTAAAGAAGATGCTACTGAAGATGAGATTGTTGAGGCTGCCAAAATTTGTAATGCTCATGATTTCATTTCTTTGCTTCCTCAAGGTTACAACACTCAGGTGGGAGAAAGAGGGGTTCAATTATCAGGTGGACAAAAACAGCGAATAGCAATTGCTCGAGCAATTATAAAGAAACCACAAATTCTACTTTTGGATGAAGCAACCAGCGCGTTAGACACTGAGTCAGAACGACTTGTCCAACAAGCACTCGACAATGCAACAACCAATTGCACCGCCATCATAATCGCCCACCGCCTCTCCACAATCCAAAATGCTGACATAGTTGCCGTGATGCACGGTGGAGAAATCATGGAGATTGGGTTACATGACGAACTTCTCCAAAACTATACCGGAATATATTCATCCCTTGTCCAACACCAACAAACCGACAAATCCAAAACAGAAATGGAAGAAACTGTTACAACTACTTTCACAAACACACGACTGGTGGTGGACCCTACCAATTTTGTTGAAGATACAAATTCTAACAATAACGTTAGTGTCTGTCTGCACGCTAACAACAAAAATGAAGAAAAAGACATGAAGGAGCTATGTAATACGGTGTCGTTTTGGAGATTACTTTTGTTAAATGTTCCAGAATGGAAGCAAGCAGTTTTGGGGTGTTTGAATGCGATGGTGTTTGGTGCGGTTCAACCTTTATATGCATTTACAATGGGGTCAATGTTATATGTGTATTTTCATAGGGATTATGAGGAAATAAAGAATAAGACTAGGGTCTATTCACTTTGCTTTTTGGGTCTCTTTGTGATAACTTTGGTGGTTAATGTTGGACAACATTATAACTTTGCTTATATGGGAGAGTACTTAACTAAACGTGTCAGAGAGAGCATGCTTTCTAAAATACTCACTTTTGAAGTTGCGTGGTTTGATCGTGACGAAAACTCCACTGGTGCTGTTTGTTCTCGACTTGCTAATGATGCTAATGTGGTGAGGTCTTTAGTTGGTGACAGAATGGCTTTGTTGGTACAAACTTTCTCAGCGGTAGTAACATCATACACAATGGGTCTAATCATTTCATGGAGGCTCACAATTGTTATGATAGCTATTCAACCAATTATAATAGCTTGCTTTTACACAAGACATGTGCTACTCAAAAGCATGTCAAGCAAGTCTATTAAGGCCCAACAACAAAGTAGCAAGCTAGCTGCTGAAGCAGTTTCAAATCTTAGAACCATAACTGCTTTTTCTTCTCAAGATAGAATACTCAAAATGCTTGAAATGGCCCAACAAGGCCCAATTCAAGAGAATTTTCGACAATCGTGGTTCGCTGGTATTGGACTTGGGCTTTCACAATTCCTCACATCTTGTTCTTGGGTCATGAATAGTTGGTACGGTGCCAAGCTTATTGCTGATGGGAACATAACAAGGAAAGCAATGTTTGAGAGCTTTATGGTTGTGGTGAGTACGGGGCGGGTTATAGCTGATGCTGGAAGCATGACTAAAGATATTAGCAAAGGTGCTACTGTCGTGGGCTCGATTTTTGCCATCCTAGATCGGTGTACAAAAATCGAGCCAGACAACTCTGATGGGTTTAAGCCCGAGACTTTAATGGGTCAAATAGAATTTTGCGACGTGCATTTTGCATACCCCGCTAGGCCTAATGTGGTTATCTTTAAAGATTTTTCAATTAAAATTGACGCAGGGAAATCTACGGCATTAGTGGGGCCAAGTGGGTCTGGAAAGTCAACCATCATAGGATTAATAGAGAGATTTTATGACCCTCTAAAAGGAAGTGTGACAATAGATGGTATGAACATAAAATCATATAACCTAAAGTCACTAAGAAAACACATAGCACTTGTGAGCCAAGAGCCAACATTAATAAATGGAACCATAAGAGACAACATTGCATATGGAACACCATGTGACAACATTGATGAAATTGAGATCATAGAGGCAGCCAGAGTAGCCAATGCTCATGATTTCATAGCTAGCTTAAAAGATGGGTATGAGACATGGTGTGGGGACAAAGGGGTGCAACTTTCAGGGGGTCAAAAACAGAGGATAGCAATAGCTAGAGCTATGTTGAAGAATCCAAAGGTGTTGCTACTTGATGAGGCAACAAGTGCACTAGATAACAATTCAGAAAAGGTAGTGCAAGATGCATTGAATAAGGTGATGGTTGGAAGGACTAGTGTGGTTGTGGCACATAGGTTGAGTACCATACACAATTGTGATGTTATTGCTGTTTTAGATAAAGGGAAAATGGTTGAGATTGGAACTCACAAAACATTGTTGGATAAAGGACCTTGTGGTGCTTATTACTCTTTGGTACGTCTTCAAACTAAACCTGCATCCACAACCAATTAA 3759 0.3903 MGGGDHKKGIDIVNKKENKNMNGSIWSIFMHADAEDWLLMIFGTIGAIGEGFNTPLILYYTSHMINNIGSSFTMDGNTFIHNINKNAVAWFYLACASFVVCFLEGYCWTRTSGRQAARMRCKYLKAVLRQDVAYFDLQVTSTSEIITSVSNDTLIIQDVLSEKVPNFLMNISLFIGSYIVAFIMLWRLAIVAFPFLILLVIPGIIYCKTLMGLSSKIREEYNKAGTVAEQTISSIRTVYSFVGENKSMAAFSNALQGTINLGLKQGLAKGLAIGSNGFVFGIWSFMCVYGSKLVMYHGAKGGTVFAVGASIAVGGLGLGASFSNLKYFSEACSAGERIKKVIERIPKIDSNNTTGEILNNVFGEVEFDHVEFAYPTRPETTILKNLCLKIPAGKTLALVGESGSGKSTVISLLQRFYDPIGGEILLDGVAIHKLHIKWLRSMMGLVSQEPALFATSIKENIIFGKEDATEDEIVEAAKICNAHDFISLLPQGYNTQVGERGVQLSGGQKQRIAIARAIIKKPQILLLDEATSALDTESERLVQQALDNATTNCTAIIIAHRLSTIQNADIVAVMHGGEIMEIGLHDELLQNYTGIYSSLVQHQQTDKSKTEMEETVTTTFTNTRLVVDPTNFVEDTNSNNNVSVCLHANNKNEEKDMKELCNTVSFWRLLLLNVPEWKQAVLGCLNAMVFGAVQPLYAFTMGSMLYVYFHRDYEEIKNKTRVYSLCFLGLFVITLVVNVGQHYNFAYMGEYLTKRVRESMLSKILTFEVAWFDRDENSTGAVCSRLANDANVVRSLVGDRMALLVQTFSAVVTSYTMGLIISWRLTIVMIAIQPIIIACFYTRHVLLKSMSSKSIKAQQQSSKLAAEAVSNLRTITAFSSQDRILKMLEMAQQGPIQENFRQSWFAGIGLGLSQFLTSCSWVMNSWYGAKLIADGNITRKAMFESFMVVVSTGRVIADAGSMTKDISKGATVVGSIFAILDRCTKIEPDNSDGFKPETLMGQIEFCDVHFAYPARPNVVIFKDFSIKIDAGKSTALVGPSGSGKSTIIGLIERFYDPLKGSVTIDGMNIKSYNLKSLRKHIALVSQEPTLINGTIRDNIAYGTPCDNIDEIEIIEAARVANAHDFIASLKDGYETWCGDKGVQLSGGQKQRIAIARAMLKNPKVLLLDEATSALDNNSEKVVQDALNKVMVGRTSVVVAHRLSTIHNCDVIAVLDKGKMVEIGTHKTLLDKGPCGAYYSLVRLQTKPASTTN* 1253
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal3g1542 1252 Gene3D ABC transporter type 1, transmembrane domain 27 619 IPR036640 GO:0005524|GO:0016021
Mal3g1542 1252 SMART AAA_5 392 586 IPR003593 -
Mal3g1542 1252 SMART AAA_5 1030 1233 IPR003593 -
Mal3g1542 1252 ProSitePatterns ABC transporters family signature. 1144 1158 IPR017871 GO:0005524
Mal3g1542 1252 CDD ABC_MTABC3_MDL1_MDL2 365 603 - -
Mal3g1542 1252 Gene3D - 355 604 IPR027417 -
Mal3g1542 1252 CDD ABC_6TM_Pgp_ABCB1_D1_like 40 338 - -
Mal3g1542 1252 Pfam ABC transporter transmembrane region 683 951 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Mal3g1542 1252 Pfam ABC transporter transmembrane region 40 307 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Mal3g1542 1252 Gene3D ABC transporter type 1, transmembrane domain 647 1012 IPR036640 GO:0005524|GO:0016021
Mal3g1542 1252 SUPERFAMILY ABC transporter transmembrane region 34 346 IPR036640 GO:0005524|GO:0016021
Mal3g1542 1252 PANTHER ABC TRANSPORTER B FAMILY PROTEIN 27 1247 - -
Mal3g1542 1252 PANTHER ATP-BINDING CASSETTE SUB-FAMILY B 27 1247 IPR039421 -
Mal3g1542 1252 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 993 1244 IPR027417 -
Mal3g1542 1252 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 358 603 IPR027417 -
Mal3g1542 1252 Gene3D - 1026 1250 IPR027417 -
Mal3g1542 1252 CDD ABC_MTABC3_MDL1_MDL2 1003 1244 - -
Mal3g1542 1252 Pfam ABC transporter 383 532 IPR003439 GO:0005524
Mal3g1542 1252 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 41 330 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Mal3g1542 1252 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 365 601 IPR003439 GO:0005524
Mal3g1542 1252 CDD ABC_6TM_Pgp_ABCB1_D2_like 670 986 - -
Mal3g1542 1252 SUPERFAMILY ABC transporter transmembrane region 668 987 IPR036640 GO:0005524|GO:0016021
Mal3g1542 1252 ProSitePatterns ABC transporters family signature. 504 518 IPR017871 GO:0005524
Mal3g1542 1252 Pfam ABC transporter 1022 1172 IPR003439 GO:0005524
Mal3g1542 1252 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1003 1241 IPR003439 GO:0005524
Mal3g1542 1252 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 687 968 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal3g1542 Mal-Chr3 66616302 66624046 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal3g1542 2 1244 Calmodulin-binding Proteins AT2G36910 42.372 0.0 1030