LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Mal3g1535	ATGGCTTCCAAAGAAACTTTACTAGACAAGCCTAGAAAATCCATTCCCAAAACATTTTGGTTAATCCTCTCTTTAGCAGCTGTCATAAGCTCATCAGCCCTCATTGTTTCTCATCTCAACAATCCTATTTCCTTCATCCACCTCTCCTCAGCTCCTAATCTGTGTGAGCATGCTCTTGATACAAAATCATGCTTAACTCACGTATCAGAGGTAGTTCAAGGTACAACCTTGGCCAACACAAACAACCACAAATTGAGTACACTCATATCCTTATTAACCAAGTCCACCACACACATTCAAAAAGCCATGGACACGGCTAGTACTGACTGTGAGCAATTAATGAACTTGTCCATGGACAGAGTTTGGGACTCAGTGTTGTCTCTAACAAAAGATAACATTGACTCACAGCAAGATGCACACACATGGCTAAGTAGTGTGCTCACTAACCATGCAACTTGCTTGGATGGATTAGAAGGTATATCTCGGGCTGTTATGGAAAATGACCTTAAGGACTTAATATCAAGAGCTAGATCTTCTCTCGCCGTGCTTGTCGCCATCTTACCTCCAAAGGATCTGGACGGATTCATTGATGAATCAATGAATGATGACTTTCCCTCTTGGGTAACAAGTAAGGATCGAAGGCTTTTGGAGTCGTCAGTTGGGGACATAAAGGCCAATGTTGTCGTGGCTAAAGATGGGAGCGGTAAGTTCAAGACTGTGGCTGAGGCTGTGGCATCTGCACCTAACAAAGGCAAGAAAAGGTATGTTATCTATGTGAAAAAGGGAACATACAAAGAGAATGTCGAAATCGGTAGCTCAAAGACGAACGTGATGCTTGTCGGTGATGGTATGGATGCAACGATAATCACAGGCAGCTTAAATTACATTGATGGAACAGGCACCTTCCAAAGTGCAACTGTTGCTGCTGTGGGGGATGGATTTATAGCTCAGGACATCGGATTCCAAAACACGGCAGGCCCACAAAAGCACCAGGCAGTTGCTCTTCGCGTTGGCTCTGATCAATCCGTCATCAACCGCTGCAAAATTGACGCATTTCAAGACACTCTCTACGCACACTCCAACCGACAATTTTACCGTGACTCCTATATTACCGGTACCATTGACTTTATCTTCGGAAACGCAGCTGCTGTGTTCCAGAAATGTAAGCTTGCAGCCCGAAAGCCCATGATCAACCAGAAAAACATGGTCACAGCCCAAGGTCGACTAGACCCAAACCAGAACACCGCAACTTCAATTCAGCAATGTGACGTAATACCAAGCTCGGACCTCAAGCCCGTGCAAGGCTCCATCAAAACATACCTAGGTCGCCCATGGAAGAAATACTCCAGGACTGTTGTGATGCAGTCTAATGTGGGCAGTCACATTGACCCAGCAGGATGGGCTGAGTGGAATGCCGCAAGTAAGGACTTTCTGCAAACATTGTATTACGGAGAGTACCAGAACAGTGGACCCGGTGCTGGTACCGCTAAGAGAGTGAACTGGCCTGGTTTTCATATCATCAATGCTGCAGAGGCTACCAAGTTTACAGTAAAACAGCTCATCCAAGGTAATGTTTGGTTGAAGAACACAGGGGTGGCCTTCATTGAAGGCCTGTAG	1617	0.4552	MASKETLLDKPRKSIPKTFWLILSLAAVISSSALIVSHLNNPISFIHLSSAPNLCEHALDTKSCLTHVSEVVQGTTLANTNNHKLSTLISLLTKSTTHIQKAMDTASTDCEQLMNLSMDRVWDSVLSLTKDNIDSQQDAHTWLSSVLTNHATCLDGLEGISRAVMENDLKDLISRARSSLAVLVAILPPKDLDGFIDESMNDDFPSWVTSKDRRLLESSVGDIKANVVVAKDGSGKFKTVAEAVASAPNKGKKRYVIYVKKGTYKENVEIGSSKTNVMLVGDGMDATIITGSLNYIDGTGTFQSATVAAVGDGFIAQDIGFQNTAGPQKHQAVALRVGSDQSVINRCKIDAFQDTLYAHSNRQFYRDSYITGTIDFIFGNAAAVFQKCKLAARKPMINQKNMVTAQGRLDPNQNTATSIQQCDVIPSSDLKPVQGSIKTYLGRPWKKYSRTVVMQSNVGSHIDPAGWAEWNAASKDFLQTLYYGEYQNSGPGAGTAKRVNWPGFHIINAAEATKFTVKQLIQGNVWLKNTGVAFIEGL*	539

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Annotation information

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Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Mal3g1535	538	ProSitePatterns	Pectinesterase signature 2.	370	379	IPR033131	-
	Mal3g1535	538	PANTHER	PECTINESTERASE	20	536	-	-
	Mal3g1535	538	SUPERFAMILY	Plant invertase/pectin methylesterase inhibitor	53	171	IPR035513	-
	Mal3g1535	538	Gene3D	-	220	538	IPR012334	-
	Mal3g1535	538	SUPERFAMILY	Pectin lyase-like	224	537	IPR011050	-
	Mal3g1535	538	PANTHER	PECTINESTERASE	20	536	-	-
	Mal3g1535	538	Pfam	Plant invertase/pectin methylesterase inhibitor	53	174	IPR006501	GO:0004857
	Mal3g1535	538	CDD	PMEI-like_4	57	186	-	-
	Mal3g1535	538	ProSitePatterns	Pectinesterase signature 1.	251	270	IPR018040	-
	Mal3g1535	538	Gene3D	Invertase/pectin methylesterase inhibitor family protein	49	187	IPR035513	-

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Mal3g1535	Mal-Chr3	66424853	66426592	Proximal

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Mal3g1535	3	538	Carbohydrate Esterase	AT1G11580	54.240	0.0	581

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Mal3g1535	K01051		-	gmx:100815836	798.505

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