Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal3g1519 ATGATTGGTTCCACTGATGACAATGAGCCTCTACAGGGTAATGAGTTTTTCAAACAGAAGAAGTTTAAGGAAGCTATTGATTGCTATTCAAGGAGCATTGCCTTCTCACCAACTGCTGTAGCCTATGCAAACAGGGCAATGGCCCATATAAAGCTAAGAAGATTTCGAGAGGCTGAGGATGACTGTACAGAGGCCTTAAATCTCGATGACCGTTACATAAAATCATACTCGCGGCGAGCAACAACTAGAAAAGAACTTGGCAAAAATAAGGAATCCATGGAGGATGCCGAGTTTGCCATGAGGTTGGAACCTAGCAATCAAGAAGTCAAGAAACAGTATGATGATGCTAAGTCACTGTACGAGAAGACTAAGATTCGTGTCTGCCATGAATTCTTCAAACGTTACTTCAACAAGCTAAAGAAACATCCTTATGCATGGCTCATGGACCAAAATGAAAAATGTGTAAGAGTAAGGTTTGGACAATCAGAAGAACAAAATTTTGTCACCTCTGGTAGAGATGTTGCAGCAGCATTCCAATGGAACAAACCAACCAGGTTTAAGCTCGAATTTACTGGTAAATTCAATAGGTTCAAGATAGCTGTGGTGAACGACAACAATGCTCCTTCTGAAGAGGTAACAGTCAGGCAAGAGGTCATTGAAATTGACATTCGGAGGACATTGAAGACTATTACGACCCAGATTTGTATCACTTTGCAAAGGAAGTAA 726 0.4091 MIGSTDDNEPLQGNEFFKQKKFKEAIDCYSRSIAFSPTAVAYANRAMAHIKLRRFREAEDDCTEALNLDDRYIKSYSRRATTRKELGKNKESMEDAEFAMRLEPSNQEVKKQYDDAKSLYEKTKIRVCHEFFKRYFNKLKKHPYAWLMDQNEKCVRVRFGQSEEQNFVTSGRDVAAAFQWNKPTRFKLEFTGKFNRFKIAVVNDNNAPSEEVTVRQEVIEIDIRRTLKTITTQICITLQRK* 242
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal3g1519 241 Pfam Coatomer epsilon subunit 34 121 - -
Mal3g1519 241 SMART tpr_5 73 106 IPR019734 GO:0005515
Mal3g1519 241 SMART tpr_5 11 39 IPR019734 GO:0005515
Mal3g1519 241 SMART tpr_5 40 72 IPR019734 GO:0005515
Mal3g1519 241 PANTHER OS05G0129900 PROTEIN 9 145 - -
Mal3g1519 241 Coils Coil 106 126 - -
Mal3g1519 241 SUPERFAMILY TPR-like 12 147 IPR011990 GO:0005515
Mal3g1519 241 Gene3D Tetratricopeptide repeat domain 4 104 IPR011990 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal3g1519 Mal-Chr3 65916437 65921127 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal3g1519 13 76 U-box Gene Family AT3G07370 40.000 5.33e-10 56.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal3g1519 K23002 - gmx:100808255 197.978