Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal3g1518 ATGACTAATGAAACCCAATTTTTCAAGATCATATGTGATCAAAGCCTTCATCAAGGAAATCTTATGATCCCAAGAAAGTTTGTAGAGAAATATAGAAAAGGTTTACCAAAAGCTATTTATCTAAAGACTCCAAATGGTGCAAAGTGGGAATTAAAGTTGGTAAAAAGTGATGGCAGGATATGGTTTGAAAAGGGTTGGAAAGAATTTGCAAAGTATCATTCTCTAGCTCATGGCCATCTTCTAGTTTTCAGATATCAAATAAATTCTCATTTTGAGGTACAAATCTTTGATAAGAGTGCCTTAGAGATAAAATACCCTATCAAAAGAGTTGAAGCTAAAAGGGTTTCCAATGGTCTAGGCAATAGACCTCCAAAGGATGAAGATTTGGAAGATTATATAGCAAGTAAAAAGAGAAAAACTAACTTGTCATTAAAATTTAATCAACCATGTGAAATTGGAAGCAGTAGTTGTGCTAAAGTTGGGAAATTGGAAAAGGTAGCAGCTTTGAATCATATTGATAAAATGTGCAAAGGAAAGCAATTGGTTAATGCTAAGAAAGTTACAACCCTTGACAGAGCAAACTCTTTGAGAACTTGTAATCCATCCTTTATTGCTGTCATGCGTCCATCATACATTGATGCTGCTTGTAATCTGAATATACCAAGTGAATTTGGTAGAAGACAATTATTAGATTTAGGCAAAAAACAGGGAGATATTCATCTTAGGTTATTCAATGGGAGAGTTTGGCCTGCAAGGTACCTAATTAGGAAAGACAATACCAGAGGAGGAGTAAAATATGAAATGTACTCGAGTGAATGGAAGACATTTGCAAACGACAATAACTTGAAAGTTGGTGATGTTTGCACCTTTGAGCTCTTTCCTACTAGCACTATACTTACCTTCACTGTTCACATCTTTAGGGATTCTTTTGAGACATAG 939 0.3482 MTNETQFFKIICDQSLHQGNLMIPRKFVEKYRKGLPKAIYLKTPNGAKWELKLVKSDGRIWFEKGWKEFAKYHSLAHGHLLVFRYQINSHFEVQIFDKSALEIKYPIKRVEAKRVSNGLGNRPPKDEDLEDYIASKKRKTNLSLKFNQPCEIGSSSCAKVGKLEKVAALNHIDKMCKGKQLVNAKKVTTLDRANSLRTCNPSFIAVMRPSYIDAACNLNIPSEFGRRQLLDLGKKQGDIHLRLFNGRVWPARYLIRKDNTRGGVKYEMYSSEWKTFANDNNLKVGDVCTFELFPTSTILTFTVHIFRDSFET* 313
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal3g1518 312 Pfam B3 DNA binding domain 14 98 IPR003340 GO:0003677
Mal3g1518 312 Pfam B3 DNA binding domain 203 308 IPR003340 GO:0003677
Mal3g1518 312 Gene3D - 181 309 IPR015300 -
Mal3g1518 312 SUPERFAMILY DNA-binding pseudobarrel domain 197 308 IPR015300 -
Mal3g1518 312 CDD B3_DNA 201 307 IPR003340 GO:0003677
Mal3g1518 312 SMART B3_2 203 309 IPR003340 GO:0003677
Mal3g1518 312 SMART B3_2 7 99 IPR003340 GO:0003677
Mal3g1518 312 Gene3D - 1 100 IPR015300 -
Mal3g1518 312 PANTHER TRANSCRIPTION FACTOR B3-DOMAIN FAMILY-RELATED 3 308 - -
Mal3g1518 312 SUPERFAMILY DNA-binding pseudobarrel domain 5 99 IPR015300 -
Mal3g1518 312 ProSiteProfiles B3 DNA-binding domain profile. 203 309 IPR003340 GO:0003677
Mal3g1518 312 ProSiteProfiles B3 DNA-binding domain profile. 6 99 IPR003340 GO:0003677
Mal3g1518 312 PANTHER B3 DOMAIN-CONTAINING 3 308 - -
Mal3g1518 312 CDD B3_DNA 7 97 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal3g1518 Mal-Chr3 65912057 65914503 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal3g1518 7 295 B3 DNA Binding Superfamily AT3G18990 29.080 3.67e-32 121
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Mal3g1518 B3 2.6e-14 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal3g1518 - - lja:Lj1g3v3690290.1 365.54