Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal3g1516 ATGGGTGCATCATACGTTGAACACCGTTTTCTTCTGACTATACCACGTATGTTTGGTGAAACACACTTTGATTTGGATAAGAAGAGAGGAGATATTTATTTTCAGTTGTTAAATGGGAAAGTTTGGCCTGCAAGGTACTCTATCAGGATTAATTTCACTCGTGGACCAAAATTTGAACTCACAAGTGGATGGAAGGAATTCGCAATGGACAATAACTTGAAAGTTGGTGATGTTTGCAAGTTTGAGCTCATCTCTAGCACTACACTGACATTCATTGTTCACATCTTTAGAGAGACAGATAATGACAACACAAATTGTTCAACATCTCAAAATTCTTCCCAAATGAAAGGTGAAGCTACTCGAGGATAA 369 0.3767 MGASYVEHRFLLTIPRMFGETHFDLDKKRGDIYFQLLNGKVWPARYSIRINFTRGPKFELTSGWKEFAMDNNLKVGDVCKFELISSTTLTFIVHIFRETDNDNTNCSTSQNSSQMKGEATRG* 123
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal3g1516 122 CDD B3_DNA 1 97 IPR003340 GO:0003677
Mal3g1516 122 Pfam B3 DNA binding domain 3 98 IPR003340 GO:0003677
Mal3g1516 122 ProSiteProfiles B3 DNA-binding domain profile. 1 99 IPR003340 GO:0003677
Mal3g1516 122 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS11G0197600-RELATED 1 98 IPR044837 -
Mal3g1516 122 SUPERFAMILY DNA-binding pseudobarrel domain 2 100 IPR015300 -
Mal3g1516 122 MobiDBLite consensus disorder prediction 101 122 - -
Mal3g1516 122 Gene3D - 1 101 IPR015300 -
Mal3g1516 122 SMART B3_2 1 99 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal3g1516 Mal-Chr3 65898507 65899154 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal3g1516 12 82 RAV Transcription Factor Family AT1G68840 37.662 6.76e-09 50.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Mal3g1516 B3 7.7e-20 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal3g1516 - - mtr:MTR_7g050580 167.162