Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal3g1515 ATGGCAAGTGAAATTCCTGAGGTGAAGCCAATCCGCTTTTTCAAGATCATAGTTAGTCAAAACCTTTATGAAGGAAAACTGATGATACCGAAAAAGTTTGTGGAGAAATATGGAGAAGGTTTGCCAAAAGCTATATGTCTAAAGAATCCAAAAGGTGCAAAGTGGAAATTAAATTTGGTAAAAAATGATGGCAAAATATGGTTTGAAAAGGGTTGGAAAGAATTTGCAGATTATCATTCCTTAGCTCATGGCCACCTTCTGGTTTTCAGATATGAAAGAACTTCCCATTTTGAGGAAATCAATCTCCAAAGGATGAAGTTTGTAGAGCAGCTCAAAAGAGAAAAGCTAACTCCTCCTTTGAAATTGGAAGCAATAGTTGTGTTAAAGTTGGAAAATTGCCAAAGGTAG 408 0.3603 MASEIPEVKPIRFFKIIVSQNLYEGKLMIPKKFVEKYGEGLPKAICLKNPKGAKWKLNLVKNDGKIWFEKGWKEFADYHSLAHGHLLVFRYERTSHFEEINLQRMKFVEQLKREKLTPPLKLEAIVVLKLENCQR* 136
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal3g1515 135 SUPERFAMILY DNA-binding pseudobarrel domain 8 97 IPR015300 -
Mal3g1515 135 Gene3D - 5 115 IPR015300 -
Mal3g1515 135 CDD B3_DNA 12 97 IPR003340 GO:0003677
Mal3g1515 135 PANTHER B3 DOMAIN-CONTAINING 6 98 - -
Mal3g1515 135 ProSiteProfiles B3 DNA-binding domain profile. 12 106 IPR003340 GO:0003677
Mal3g1515 135 SMART B3_2 13 106 IPR003340 GO:0003677
Mal3g1515 135 PANTHER TRANSCRIPTION FACTOR B3-DOMAIN FAMILY-RELATED 6 98 - -
Mal3g1515 135 Pfam B3 DNA binding domain 13 97 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal3g1515 Mal-Chr3 65895467 65898088 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal3g1515 13 98 B3 DNA Binding Superfamily AT3G18990 45.349 3.90e-21 85.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Mal3g1515 B3 9.2e-18 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal3g1515 - - mtr:MTR_7g050580 172.94