Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal3g1508 ATGGCTAGTGAAATTCCTGAGGTGAAGCCAATCCACTTTTTCAAGATCATACTTACTCAAAATCTTCATGAAGGAAAGCTTATGATGCCAAGAAAGTTTGTGAAGAAATTTGGAGAAGGTTTACCAAAAGCTATGTATCTGAAGACTCCAAATGGTGCAAAGTGGAAATTAAATTTAGTAAAAAGTGATGGCAAAATATGGTTTGAAAAGGGTTGGAAAGAATTTGCAGAGTATCACTCTCTAGCTCATGGCCATCTTCTGCTTTTCAGATATCGAAGAAATTCTCATTTTCTTGTGCGTATCTTTGAAAATAGTGGATTAGAGATAAATTACCCTTTCCAAAGAGTTGCAGCTGAAAAGGTCTCCAAAGATCAAGGAAATAAACCTCCAAATGGTGAAAATTGTAGAGCAGCTCAAAAGAGAAAAGCTAACTTCTCCTTTGAATTTCATCAACCATGTGAAATTGAAAGCAGTAGTTGTGTTAAAGTTGGAAAATTGCAAAAGGTATCAACTTTGCATCATACTGATAGAAAGTCCAAAGGAAATCAAGTAATTACTGCTAAGAAAGTTAGAACTCTTGAAAGAGCAAAATCTTTCAAAACATGTAATCCATCCTTTGTTGTTGTCATGCGTGCGTCATACGTTGAACATCATTTTCTACTGAGTATACCACGTATGTTTGGTAATAGACACTTTGATTTGGATAAAAAGAGAGGAGTAATTTATTTTGAGGTGTTAAATGGAAGTGTTTGGTCTGCAAGGTACTCTATCAGGAGGACTCCTAATGGACTAAAATTTGAACTCACTGGTGGATGGAAGGCATTTGCAAATGGCAATAACTTGAAAGTTGGTGATGTTTGCAAGTTTGAGCTCATCTCTAGCACTATAATGACCTTCATTGTTCATATCTTTAGAGAGACAGACAATGACAACACAAATTGTTCAACATGTCAAAAATCTTCCCAAATCAAAGAAGAAGCTACTCAAGGATAA 993 0.3545 MASEIPEVKPIHFFKIILTQNLHEGKLMMPRKFVKKFGEGLPKAMYLKTPNGAKWKLNLVKSDGKIWFEKGWKEFAEYHSLAHGHLLLFRYRRNSHFLVRIFENSGLEINYPFQRVAAEKVSKDQGNKPPNGENCRAAQKRKANFSFEFHQPCEIESSSCVKVGKLQKVSTLHHTDRKSKGNQVITAKKVRTLERAKSFKTCNPSFVVVMRASYVEHHFLLSIPRMFGNRHFDLDKKRGVIYFEVLNGSVWSARYSIRRTPNGLKFELTGGWKAFANGNNLKVGDVCKFELISSTIMTFIVHIFRETDNDNTNCSTCQKSSQIKEEATQG* 331
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal3g1508 330 PANTHER B3 DOMAIN-CONTAINING 6 306 - -
Mal3g1508 330 SUPERFAMILY DNA-binding pseudobarrel domain 8 105 IPR015300 -
Mal3g1508 330 CDD B3_DNA 12 102 IPR003340 GO:0003677
Mal3g1508 330 ProSiteProfiles B3 DNA-binding domain profile. 206 307 IPR003340 GO:0003677
Mal3g1508 330 PANTHER TRANSCRIPTION FACTOR B3-DOMAIN FAMILY-RELATED 6 306 - -
Mal3g1508 330 Pfam B3 DNA binding domain 206 306 IPR003340 GO:0003677
Mal3g1508 330 Pfam B3 DNA binding domain 13 104 IPR003340 GO:0003677
Mal3g1508 330 Gene3D - 5 106 IPR015300 -
Mal3g1508 330 Gene3D - 183 309 IPR015300 -
Mal3g1508 330 ProSiteProfiles B3 DNA-binding domain profile. 12 105 IPR003340 GO:0003677
Mal3g1508 330 CDD B3_DNA 204 305 IPR003340 GO:0003677
Mal3g1508 330 SMART B3_2 206 307 IPR003340 GO:0003677
Mal3g1508 330 SMART B3_2 13 105 IPR003340 GO:0003677
Mal3g1508 330 SUPERFAMILY DNA-binding pseudobarrel domain 202 308 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal3g1508 Mal-Chr3 65717451 65720526 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal3g1508 13 308 B3 DNA Binding Superfamily AT3G18990 28.446 1.72e-33 125
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Mal3g1508 B3 6e-20 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal3g1508 - - mtr:MTR_7g050580 484.952