Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal3g1481 ATGGCTGGTGTTTCTAGCAGAACTCGTAGCAAAAATGTTCCGTTATTTGGTTGTATTCCACTTGTTGGTTCATCAAAAAGGAGAATGAAAAAGGGTTTGGACTCTGTTTCTGCTTCTAAGAAAAGGAAGGTGAGTGATGAACCTTTTGTTGTTCCTAAAGATGCCGAGGTAGTTTCCATCGATGATGATGAAGATGAAGAAGGGCCAGAGCAATATGATGAGAAAATGTTTGAGGGTGGTGTTGAAAGTGGAGGAAGTGGTGATTTTGATGCTAAAGATGAAAAGTGTGGTAGGGCACAAGATAACCCTATTACAATATGTTCAGGTGAGTATGATGAAAGTGATGAAGAACATTCTGTTGGTTCTGATGCTGATAATGAGCAAGAAGAAGATGATGATGATGCTAAAAAGAGAGTAAAAATTGATGAAAGAGAGGGAATTGGTAGGATTTCTGATAAAGGTAAAATAGTTGTTGATTTGGATGATTCTGATGAGAGTGATGATGATGATGATGATGATTCTGATGATGATGATGATGAGAAGGAGGAAGAGAAGAAGAAAAAGGGTTGTAGAAAAGACTTCAATGTGGTGGAGGATTTGGTAAGAGAGGTGAAGGATAAAAAAAGTGGAATTTCTGAGAGGAAATATGAGGAGGAGAAGAAAAAAGGTTATAGAAAAGATTTCAATGTGGTGAAGAGGTTGGTAAGAGAGGTGAAGGATAAAAATTATGGAATTTCTAAGAGGAATAATGAGGGGGTAAATGTCGCGAATAGTTCATCTTACACAAATACTGATGAGTTGGAGCATGCAGATCATGCTAGTGTTTCCTCTAGTAGCTATAAGAAGAAGGATTTTTCTTTTAAAGTGAATGGATTATCACAAACACTGAATGCCAAATCCAAAGACAATGTTGGAGGAGTTTCTTTAGTTCAAAAAAAGCATGAAAAGATGAAGGAATCGGATAAACAGAAAACGATGGAGGACAAAGTAAGGGATTATCAAGGCAGAGCTAACATCCATAATAATGAGAACAAGGGATCTATTGATAAAAGTGGTTTGAATCAAAGAACCAAAAGCAAACATTTTAAGCCGAATGAGGTGCGTTTATTCCTTGCTCAATTGTATCAGGATAACAAGAAGAATACCATGAAGAATGATTCAATTGTGTTGGAGGTCAAAGACGATGGTGTTGATCGGCAAGATTCAGGGCCACCACCAGTTTCTGTGGACACACCTCATGAACGGATATGGAGCCTTAAAAAGGTGGAAATAGTTCAAAAGTCCAAGGAGGATGAGGAGCAGGAATCGTTGTGGGATGAATTTGATACAGCCCTCAGAGAATCGGACGCTGAATCCATGATAGGAAATTTAGGGACAAGTAATACTACACAAGAAAAAACCGGAGGTCCATCATCTCGCTGTGAACATGATACTTTTCTCAACGAAGAGATTGGTCTAATTTGCAAATTATGTCGTGTGGTAGTTACTGAGATCAAATATATCTCACCACCTGTGATTGATAGTATTCGCAATGAAGGTTCTGGAAAGAGGGGTTCATTTGATGATTTTGTAAATGCCTCACTCTTTGATGGCTCTCAGTTCAATGTTTCTGATGGTGATTCAGATGCTAATTTCTTTCATAAAGAAGGCACAGTTTGGGACCTAATTCCAGATGTTAAGCAAACTTTATATCCCCATCAAAAAGAAGGCTTTGAATTCATATGGAAAAACCTGGCAGGAAACATTGAACTTCAAAAGTTAAAGAATGCCGATCCTCGAAGGGAAGGTGGCTGCATTATTTCGCATGCTCCTGGAACTGGAAAGACTAGGTTGACAATAGTGTTTCTCAAGGCATATTTGAAAGTTTTTCCAAGATGCTTGCCGATTATTGTTGCACCTGCGAATTTGTTGCTTACTTGGGAAGATGAGTTTAAAAAATGGGACATAGGTGTTCCATTTCATAATTTGAACAATCCCGAGTTATCTGTTAAAGAACATGATGATGTTGTTAATGAAATTAATTGGTCTAATACACGAAAGAGTACAGAGGAGACGCGGATGGTGAAACTGATTTCGTGGTTCAAAGACAAGAGCATTTTGGGAATCAGTTACAGTTTGTACGAGAAGCTAGCCGGAGGAGGAGGGGAATCTGAAAACAGTTGTATGAGAAAGGTTTTACTTAAAACTCCTGGTTTGTTGGTTCTAGATGAAGGACATACGCCGAGAAATAAAAAAAGTCTTATTTGGAAGGTGTTGTCGAAAATGCAAACGCCGAAGCGAATCATCCTTTCTGGAACTCCTTTCCAGAACAATTTCTTGGAACTGTACAACACTTTGAGCTTGGTGAAGCCTTCTTTTCCTAAAACGATACCGCAAGAGCTGAAAAAGTTTTGCCAGAAGCAAGAACATAAGAAAGTATCTATAGAATGGAGTTGGGAACCGGTTTTGGGAGACACGACAGGTAATACTTCTGACGATAAGATCAAGCAGTTGAAATTGCTTATGGATCCCTTTGTTCATGTTCACAAAGGCGCGATCCTACAAAAGAAGCTTCCTGGGCTAAGAGATTGTGTGCTGCGTTTGAAGCCGGACAGTTTTCATATGCAAATTCTTGAGAGTTTTAAAAGTTCTCAGAACTCATTCATCTTTGAGAATAAGCAGACACTGGCGTCAATCCATCCGTCTCTTTTCCTCGAATGCAAACTTTTGAAAGAAGAAGAATCTGCTGTCGACAAGGACCGGCTAGAAAAGCTTAGATTGGACCACAATGCAGGAGTCAAAACAAAGTTTTTGGTTGAGTTTGTTAGTCTTTGTGCTGCGCGTAATGAAAAAGTTCTTGTGTTCAGCCAATTCCTCAGTCCTTTACGCTTAATTATAGACCAATTAAACTCGGCTCTTAAATGGACCGAGGGGAAGGAAATTCTCTACATGTATGGAGAGGTTAAGGACAGGCAATCCTTAATCCATAACTTCAATGGTGCAAACAGCCAAGCGAAGATTCTCCTTGCATCAACGAGAGCTTGTTCCGAGGGAATCAGCTTAGTTGGAGCTTCAAGGGTTGTTCTACTAGATGTCGAATGGAATCCTTCAGTTGAAAAACAGGCCATCAGCAGAGCTTATCGAATTGGACAGAAGAAGGTTGTGTACACATATCATCTGCTCACTCAAGGAACTAAAGAGTGTGATAAATATTGCAAACAGGCTGAAAAGCACCGGTTGTCTGAACTAGTTTTTTCGGCTAAAAATGCCGATCATAATGATGAGTTGAAGAGCTCTGCGGCGAACATTGAAGATAAGATTCTTGATCTGATGATTCGGCACAAAAATCTCAAAGACATGTTTGTTGAATGTGTAGTACAGCCGAAGGAGCGAGAATTTGAGAGTTTTGGCTAA 3393 0.3938 MAGVSSRTRSKNVPLFGCIPLVGSSKRRMKKGLDSVSASKKRKVSDEPFVVPKDAEVVSIDDDEDEEGPEQYDEKMFEGGVESGGSGDFDAKDEKCGRAQDNPITICSGEYDESDEEHSVGSDADNEQEEDDDDAKKRVKIDEREGIGRISDKGKIVVDLDDSDESDDDDDDDSDDDDDEKEEEKKKKGCRKDFNVVEDLVREVKDKKSGISERKYEEEKKKGYRKDFNVVKRLVREVKDKNYGISKRNNEGVNVANSSSYTNTDELEHADHASVSSSSYKKKDFSFKVNGLSQTLNAKSKDNVGGVSLVQKKHEKMKESDKQKTMEDKVRDYQGRANIHNNENKGSIDKSGLNQRTKSKHFKPNEVRLFLAQLYQDNKKNTMKNDSIVLEVKDDGVDRQDSGPPPVSVDTPHERIWSLKKVEIVQKSKEDEEQESLWDEFDTALRESDAESMIGNLGTSNTTQEKTGGPSSRCEHDTFLNEEIGLICKLCRVVVTEIKYISPPVIDSIRNEGSGKRGSFDDFVNASLFDGSQFNVSDGDSDANFFHKEGTVWDLIPDVKQTLYPHQKEGFEFIWKNLAGNIELQKLKNADPRREGGCIISHAPGTGKTRLTIVFLKAYLKVFPRCLPIIVAPANLLLTWEDEFKKWDIGVPFHNLNNPELSVKEHDDVVNEINWSNTRKSTEETRMVKLISWFKDKSILGISYSLYEKLAGGGGESENSCMRKVLLKTPGLLVLDEGHTPRNKKSLIWKVLSKMQTPKRIILSGTPFQNNFLELYNTLSLVKPSFPKTIPQELKKFCQKQEHKKVSIEWSWEPVLGDTTGNTSDDKIKQLKLLMDPFVHVHKGAILQKKLPGLRDCVLRLKPDSFHMQILESFKSSQNSFIFENKQTLASIHPSLFLECKLLKEEESAVDKDRLEKLRLDHNAGVKTKFLVEFVSLCAARNEKVLVFSQFLSPLRLIIDQLNSALKWTEGKEILYMYGEVKDRQSLIHNFNGANSQAKILLASTRACSEGISLVGASRVVLLDVEWNPSVEKQAISRAYRIGQKKVVYTYHLLTQGTKECDKYCKQAEKHRLSELVFSAKNADHNDELKSSAANIEDKILDLMIRHKNLKDMFVECVVQPKEREFESFG* 1131
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal3g1481 1130 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 553 812 IPR027417 -
Mal3g1481 1130 PANTHER SNF2 DOMAIN-CONTAINING PROTEIN CLASSY 2-RELATED 1 1127 IPR044567 GO:0080188
Mal3g1481 1130 MobiDBLite consensus disorder prediction 247 281 - -
Mal3g1481 1130 Coils Coil 1086 1106 - -
Mal3g1481 1130 SMART ultradead3 559 793 IPR014001 -
Mal3g1481 1130 CDD SF2_C_SNF 919 1054 - -
Mal3g1481 1130 PANTHER SNF2 DOMAIN-CONTAINING PROTEIN CLASSY 4 1 1127 - -
Mal3g1481 1130 MobiDBLite consensus disorder prediction 394 414 - -
Mal3g1481 1130 MobiDBLite consensus disorder prediction 308 329 - -
Mal3g1481 1130 MobiDBLite consensus disorder prediction 58 72 - -
Mal3g1481 1130 MobiDBLite consensus disorder prediction 161 180 - -
Mal3g1481 1130 MobiDBLite consensus disorder prediction 247 264 - -
Mal3g1481 1130 Pfam Helicase conserved C-terminal domain 938 1043 IPR001650 -
Mal3g1481 1130 MobiDBLite consensus disorder prediction 116 130 - -
Mal3g1481 1130 MobiDBLite consensus disorder prediction 29 189 - -
Mal3g1481 1130 MobiDBLite consensus disorder prediction 454 473 - -
Mal3g1481 1130 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 729 1087 IPR027417 -
Mal3g1481 1130 SMART helicmild6 960 1043 IPR001650 -
Mal3g1481 1130 Gene3D - 856 1125 IPR027417 -
Mal3g1481 1130 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 589 785 IPR014001 -
Mal3g1481 1130 MobiDBLite consensus disorder prediction 454 469 - -
Mal3g1481 1130 MobiDBLite consensus disorder prediction 306 329 - -
Mal3g1481 1130 MobiDBLite consensus disorder prediction 131 160 - -
Mal3g1481 1130 Gene3D - 542 812 IPR038718 -
Mal3g1481 1130 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 930 1097 IPR001650 -
Mal3g1481 1130 Pfam SNF2-related domain 581 888 IPR000330 GO:0005524|GO:0140658
Mal3g1481 1130 MobiDBLite consensus disorder prediction 29 50 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal3g1481 Mal-Chr3 64911363 64915788 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal3g1481 943 1073 RAD5 or RAD16-like Gene Family AT5G43530 39.098 1.36e-14 77.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Mal3g1481 SNF2_N 4.2e-23 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal3g1481 K10875 - gmx:100812737 877.47