Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal3g1479 ATGGCTGGTGTTTCTAGCAGAACTCGTAGCAAGAATGTTCCCTTGTTTCGTAGTGTTTCACTTGGTGGTTCATCAAAGCGGCGAAAGAGTGATCAAGATGACATGGGTTTGGATTTTGGTTCTTGTTCTAAGAAAATGAAAGTAAGAAAAGAAGCTTTTGTGGTTCCTAAAGGTACTGAGGTTATTATCATTGATGAGGATGAAGAAGGTTCAGTGAAGAAATGTGATGAGAAGATGTTTGAGGGTGGTGATGTTGGAAAAGAAGAAGGAGATGAAGAAAACCCTATTACAATAGACTCAGATGAGTATAGTGAAAGTGATGAACAACACTCTATTAGTTCTGATTCTGAATATGATGCTGATGATGTTAAAGGTGGAGTAAAAAGTGGAGGAAACGGTGAGTTTTCTTATAAAGATAAAAACTTTGTTGATTTGGTTGATTCTGATGAGAGTGGTAATGATTCTGATGAAGAAATGTTTGTTGATTCTGATGATGATGATGATTCTGATGAGAGTGGTGATGATTCTGATGATTCTGATTTTGAAGTTGATGAGCTGAATGACATTTCTGACAAGGATGATGAAAGTTCTTGTGGCTCTCCTTATGAAGATGAGAAGGAAGAGGAAGAGGAGAAGAAGAAGAAGAAGAAGAAGAAGAAAAAGAAATTGACGAGAGAGGCGATAGATAGCGGAACTTCTGAGATGAATAATGAGGAAGTGAAGGATAAAAGTCCTTCTTCTGTAAACAATGAAGTGGAGAATTCAGATTATGGTAGTGTAGCAACTTCCACTGCCTTTGAGAAGAAGGGTTCTTTTGATTCAATGAAGGGTTCTTGTTCAAACAAGGACACATCAGAGAAACAAAAGGCAGAAAGTGTGGAAAATGTCTTTGATGGTGATGTAAATGTTGCCAAAGCCAAAGAACGTGATGAAAGTGTTAATCTTTGTGATGAGGTTAATGTTGGCAAATCCAAAGTCAAAGCCAAAGACAATGCTAAACCTAATGACAGTGTGAATGTTGCTGGTTCTGATGAAAGAAAGGAACAATGTGTCAAAGGTTTAGGAGTTGGAGGGGTTTCGTCGGTTCAAACGAAGCAAGAAAAGATGAAGGAATCGGATACGCAGAAAATGACAGAGAACAATGGAAGGGATTTCAAAGGTAGAGCTAACATCTGTATTGAGACGCCTCCATCGATATGGAGCCTTAAAAAGGACCATGGGGTTCAAATGAAGCAAGGAAAGATGAAGAATGAATCAATTGTGTTGGAGTTCAAGGACGATGGGGTTGACCGACGAGATACACGGTCACCACCGGTTTCTGTGCAGACACCCCCATCGATACGGAGCCTTAAAAAGGTAGCAAAACTTCAAAAGACCAAGGAGGAGGAGGAGGAGAACGAAGTATTATGGGATGAATTGGATAGAGGCCTTAGAGAATCAGAAGTTGTACCCAAGAATGAAGCATCAGAAGAACAAAAAGCAAAAAGTGTAGGAAATGTCTCTGATGTTGCCAAAGCCAAATCGAAATCCAAAGACAAAGCCAAACCTAATGACAGTGTGAATGTTGCTGACTGTGATGAAAGAGAAGAACAATATGTCAAAGGTTTAGGTGTTAGAGGAGTTTCATCGGTTCAAGTGAAGCAAGAAAAGATGAAGGAATCAGATGAAAAGAAAATGATAGAGAGTAATGGAAGGGATTACAAAGGTAGAGCTAATATCTGTATTGAGAAGAAGGAATCTATTGATAAGAAGAATGGTTTGAATCAAAGGGTCGAAAGCACACATTATATGCGGAAGGAGTTGCGTTCACTGGAACTCCTTGCTAAATGCTATTTGGAAAGAAAGAATACCATGAAGAATGATTCAACTGTGTTGGAGGTCAACAACAATGGCGTTGATCGGCAAGATACGCAGCCCCCACCAGTTTCTGTGCAGACACCTCCGGAACGGATATGGAGCCTTAAAAAGGTTGAGATAGTTCAAAAGACTAAGGAGCAGGAGGAGGAGGAAATGTTATGGGCTGAATGTGATATAGCCCTTAGAGAATCAGAAGCTGTATCAAAGATTGGAAAGATTGGTACAAATGAAGCTTCAAATATAAAAATCGGATGTCCATCATCTCATTGCGAACATGAAGACACTTATCTCGACGAAGAGATTGGTCTAATTTGCAAATTGTGTCGTGTGATTGTTACTGAGATCAAATATATCTCACAACTAGTGATCGATAGATGTCCCGGTGAAGGCTCAGGGAAAAAGGCATCATTTGATGGAGTAAATATTTCACCGCTTGATGGATCTCAATTCAATGTTTCTAATAATGATTCAGAGACTAATTTATCTCGCAATCAGGGAACAGTTTGGGACCTAATTCCAGATATGAAACAAACCTTATATCCTCACCAACAAGAAGGCTTTGAATTCATTTGGAAAAATTTGGCAGGAAACATCGAGCTTCAAAAGTTAAAGAATGCCGACGCTTGCAGCGAAGGTGGCTGCATTATTTCTCATGCACCTGGAACCGGAAAGACAAGGCTGACCATAGTGTTTCTCAAGGCCTATTTGAAAGCGTTTCCAAATTGCTTGCCGATTATTGTCGCTCCTGCTAGTATACTACTGACTTGGGAAGACGAATTCAAGAAATGGGACATCGGAGTTCCATTTCACAATTTAAGCAATCCCGAGTTATCTGGTAAAGAGCATGCTGATGCGGTTGAAACATTCGGTAGGTCTAATACACAGCATGGTAGAGATGAAACGCGGACGGCGAAACTGATTTCGTGGTTCAAAGAAACAAGCATTCTTGGAATCAGCTACAATTTGTTTGGAAAAAAATGCAAAGATAAGAAAAAGCATGAAAGTTTGGAGAGAAAAGGAAACTGTGATATGCAAAAGATTCTACTTGAAGCTCCTGGTTTGTTAGTTCTAGATGAAGGACACACACCAAGAAATCAAAGAAGTCATATTTGGAAGGTGTTGTCGAAGATTCAAACGCAGAAGCGTATCATCCTTTCCGGAACTCCATTCCAGAACAATTTCTGGGAGCTTTACAGTACCTTAAGCTTAGTGAAGCCTTCTTTTCCTAACATGATACCGCCTGAGCTCAAAAGTTTTTGCCAGAATCAAGGACTTCAATCATCTAAAAAATTTAGTTGGCAACCTGTTTTGGGCAACACAAAAAGAGATCCTTCTGATGATAAGATCAAGAAGTTGAAATTGCTAATGGATCCCTTTGTTCATGTGCACAAAGGTGCGATCCTCGAAAATAAGCTTCCCGGGTTAAAGGAATGTTTGGTGACTTTGAAGGCAGATAGTTTGCAGAATGAAATTCTGAAGACCATTAAACGTTCTCAGAACACAGTATTTAACTTTGAGCGTAAGATAGCATTGACATCCGTCCATCCATCACTTTTCCTTGAATGTGCTCTTTCGAAAGAAGAAGAATCTGTTCTCGACAAGGATCAGCTGGAAAAGCTTAGACTGAATCCACATGAAGGTGTCAAAACAAAATTTTTGTTTGAGTTTGTTCGGCTATGTGATGCTGTTAACGACAAAGTTCTTGTGTTCAGCCAATTCCATGCTCCTTTACAATTAATTAAAGATCAATTAAACTTGGCTTTTAAATGGTCTGAGGGAAAGGAAGTGCTGCTCATGTCTGGCGAGGATCCTCTAAAGGTCAAGCAGTCCCTAATCCATAGCTTCAACGATGCAAATTGCAAAGCGAAGGTTCTACTTGCATCTACAAAAGCTTGTTCCGAGGGAATTAGCTTAGTTGGAGCTTCAAGGGTTGTACTTCTGGATGTTGTATGGAATCCTTCGGTCGAAAGACAGGCTATCAGCCGAGCGTATAGGATTGGACAGAAGAAAGTGGTATACACATACCATCTTCTCGCTGAAGGGACTACTGAGGAAGAAAAATATGGTAAACAGGCTGAAAAGGACCGGTTATCTGAGCTCGTTTTTTCAGCGAAAAATGCCGCCAATAATGATGATGAGTCTAAGAGCTGTGCTGTGAACTTTGAAGATAGAGTTCTTGATGAGTTGACTCAGCACGAAAAGCTCAAAGACATATTTGTTAAGTGCGTGGTATTGAGGAAAGAGCGAGATGTGGTCTGA 4116 0.3999 MAGVSSRTRSKNVPLFRSVSLGGSSKRRKSDQDDMGLDFGSCSKKMKVRKEAFVVPKGTEVIIIDEDEEGSVKKCDEKMFEGGDVGKEEGDEENPITIDSDEYSESDEQHSISSDSEYDADDVKGGVKSGGNGEFSYKDKNFVDLVDSDESGNDSDEEMFVDSDDDDDSDESGDDSDDSDFEVDELNDISDKDDESSCGSPYEDEKEEEEEKKKKKKKKKKKLTREAIDSGTSEMNNEEVKDKSPSSVNNEVENSDYGSVATSTAFEKKGSFDSMKGSCSNKDTSEKQKAESVENVFDGDVNVAKAKERDESVNLCDEVNVGKSKVKAKDNAKPNDSVNVAGSDERKEQCVKGLGVGGVSSVQTKQEKMKESDTQKMTENNGRDFKGRANICIETPPSIWSLKKDHGVQMKQGKMKNESIVLEFKDDGVDRRDTRSPPVSVQTPPSIRSLKKVAKLQKTKEEEEENEVLWDELDRGLRESEVVPKNEASEEQKAKSVGNVSDVAKAKSKSKDKAKPNDSVNVADCDEREEQYVKGLGVRGVSSVQVKQEKMKESDEKKMIESNGRDYKGRANICIEKKESIDKKNGLNQRVESTHYMRKELRSLELLAKCYLERKNTMKNDSTVLEVNNNGVDRQDTQPPPVSVQTPPERIWSLKKVEIVQKTKEQEEEEMLWAECDIALRESEAVSKIGKIGTNEASNIKIGCPSSHCEHEDTYLDEEIGLICKLCRVIVTEIKYISQLVIDRCPGEGSGKKASFDGVNISPLDGSQFNVSNNDSETNLSRNQGTVWDLIPDMKQTLYPHQQEGFEFIWKNLAGNIELQKLKNADACSEGGCIISHAPGTGKTRLTIVFLKAYLKAFPNCLPIIVAPASILLTWEDEFKKWDIGVPFHNLSNPELSGKEHADAVETFGRSNTQHGRDETRTAKLISWFKETSILGISYNLFGKKCKDKKKHESLERKGNCDMQKILLEAPGLLVLDEGHTPRNQRSHIWKVLSKIQTQKRIILSGTPFQNNFWELYSTLSLVKPSFPNMIPPELKSFCQNQGLQSSKKFSWQPVLGNTKRDPSDDKIKKLKLLMDPFVHVHKGAILENKLPGLKECLVTLKADSLQNEILKTIKRSQNTVFNFERKIALTSVHPSLFLECALSKEEESVLDKDQLEKLRLNPHEGVKTKFLFEFVRLCDAVNDKVLVFSQFHAPLQLIKDQLNLAFKWSEGKEVLLMSGEDPLKVKQSLIHSFNDANCKAKVLLASTKACSEGISLVGASRVVLLDVVWNPSVERQAISRAYRIGQKKVVYTYHLLAEGTTEEEKYGKQAEKDRLSELVFSAKNAANNDDESKSCAVNFEDRVLDELTQHEKLKDIFVKCVVLRKERDVV* 1372
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal3g1479 1371 Pfam SNF2-related domain 819 1120 IPR000330 GO:0005524|GO:0140658
Mal3g1479 1371 Coils Coil 447 467 - -
Mal3g1479 1371 MobiDBLite consensus disorder prediction 505 525 - -
Mal3g1479 1371 PANTHER SNF2 DOMAIN-CONTAINING PROTEIN CLASSY 4 1 494 - -
Mal3g1479 1371 PANTHER SNF2 DOMAIN-CONTAINING PROTEIN CLASSY 2-RELATED 489 1370 IPR044567 GO:0080188
Mal3g1479 1371 MobiDBLite consensus disorder prediction 1 23 - -
Mal3g1479 1371 MobiDBLite consensus disorder prediction 103 124 - -
Mal3g1479 1371 MobiDBLite consensus disorder prediction 66 293 - -
Mal3g1479 1371 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 789 1038 IPR027417 -
Mal3g1479 1371 Coils Coil 202 226 - -
Mal3g1479 1371 MobiDBLite consensus disorder prediction 366 383 - -
Mal3g1479 1371 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 971 1330 IPR027417 -
Mal3g1479 1371 SMART ultradead3 794 1038 IPR014001 -
Mal3g1479 1371 MobiDBLite consensus disorder prediction 324 390 - -
Mal3g1479 1371 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 1174 1327 IPR001650 -
Mal3g1479 1371 PANTHER SNF2 DOMAIN-CONTAINING PROTEIN CLASSY 4 489 1370 - -
Mal3g1479 1371 MobiDBLite consensus disorder prediction 471 492 - -
Mal3g1479 1371 MobiDBLite consensus disorder prediction 1 40 - -
Mal3g1479 1371 Gene3D - 768 1051 IPR038718 -
Mal3g1479 1371 MobiDBLite consensus disorder prediction 247 279 - -
Mal3g1479 1371 CDD SF2_C_SNF 1168 1297 - -
Mal3g1479 1371 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 824 1026 IPR014001 -
Mal3g1479 1371 MobiDBLite consensus disorder prediction 24 40 - -
Mal3g1479 1371 MobiDBLite consensus disorder prediction 66 93 - -
Mal3g1479 1371 SMART helicmild6 1197 1286 IPR001650 -
Mal3g1479 1371 MobiDBLite consensus disorder prediction 422 525 - -
Mal3g1479 1371 MobiDBLite consensus disorder prediction 149 191 - -
Mal3g1479 1371 Pfam Helicase conserved C-terminal domain 1180 1286 IPR001650 -
Mal3g1479 1371 Gene3D - 1092 1367 IPR027417 -
Mal3g1479 1371 PANTHER SNF2 DOMAIN-CONTAINING PROTEIN CLASSY 2-RELATED 1 494 IPR044567 GO:0080188
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal3g1479 Mal-Chr3 64890158 64895716 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal3g1479 1183 1344 RAD5 or RAD16-like Gene Family AT5G05130 37.423 1.04e-16 84.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Mal3g1479 SNF2_N 5.9e-22 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal3g1479 K10875 - gmx:100806733 827.394