Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal3g1476 ATGAGTAAGGAAAGTGATGAGATTGATGCTAAAGATGGAAACATTGTTGAAGAAGAAGAAAATGATGATGATGAAAGTGAAAGTGAAGAAAATGAGACTAGTGATGAGGATTTTAGAGTTGATGTGCTGAATGAGATCTCAGACAATGATGATGACAGTTCTTCTGATGATGAGAAGAAAAAGGGTTATAGAAAAGATGAGTTTGAGCATGCTAGTGTTTCTTCTAGTAAACTGAATGAAGTATCAGAAATACTGAAAACAAAGAGTGTGGAAGTGAAAGTGAAAAATGTCTCTGATGAAAGTGTGAATGTTGGAGTGAATGCCAAATCCAAAGACAATGTTGGTGATTCTGATGTAGGAAAAGATCAATATGTCAAAGGTTTAGATGCTGGGGGAGTTTCTTTGGAGAATGATTCAATTGTTTTGGAGTTCAAGGACAACGGGGTTGATCGACAAGATACACAGTCACCACCGGTTTTTGCGGAGACCACACCATCGATATGGAGCCTTCGAAAGGTAGAAAAAGTTCAAAAGACCAAGGAGATTGAGGATGATGAGGTGAATGTGATTTCTGACAATGATGATGATAGTTCTTCTAGCTCCTCTTTTGTTCATGATGATGATGATGATGATGAGGAGGAGGAGGAGGAGAAGAAGCAGGAGGATTTGAAAAAGATTTGGGAAGAATGTTCCAATGCGTTAGAGGAGATGGCGAGAGAGGTGGAGGATAAAAAAAGGGGAATTTCTGAGAGGAATAATGAGGAGGTAAACATTGATAATGGTCCTTCTTCTGTTAACAACGATGTTTCGAAACATGCAGATCATTCTAGTTTAACAACCTTTGAGAAAAAGGGTTACTTTGATCCAATCAAGGATTGGTCTTCTTTTCCTTTTCCCAACCTGAATGAAGCATCGAAGAAATGCAAGCCGAAGAGTGTAAACATAAAGATGCAAAATGTCAGTAATGAAGATGACATTCAAGTCATTGCTGATCAACCTATAAGTTTTGGTCATTCTAAGGCTCACAAGGGTGAAACAAATAATGCCAAAGCAAAAGCTAATAAGAATGTTAATGTTGGTGATTCTGATGAAGGAACACAGCAATATGTCGAAGGTTTAGGTATTGGAAGAGTTTCTCCCTCTCAAGTAAAACCAGAAAAGACGAGGGATTCGGATAAACCAAAAATGAAGGAGAACAAAGGAAGGGATTCTAAAGGCAGATTTAGGATCCGTAATGGTGAGAAGAGGGAAACCATGGATAACAATGGTTTGAATAAAAGGGTGAAAAGCTCGCTGTTTATGCCGAAGGAGTTGCATTTAGCTAAACTCTTTGCTGAATGCTATTGGGAAAACAAGAATGATACCAGGAAGAATGATTCAATTGTGTGGGAGGTTAGCGACAATGGCGTTGATCGACGAGATACACGGCCACCACCAGTTTCTGTGGAGATACCTCAACAGATATGGAGCCTTAAAAAGGTGGAAAAAGTGAAAAAGACGAAGGAGGAGGAGGAGCAGGAACCGTTATGGGATCAAATGGATATAGCTCTTAGAGAAGAAGATGCTGTATTAATGATTGGAAATTTAGGGACAAATGAAGCTAAACAAGAATACATGGGAGATCTATCCCCTCTCTGTGAACATGACACTCGTCTCGACGACGAGATTGGTGTATATTGCAGATTGTGTGGTGTGGTTATCACCGAGATCAAATATATCTCCCAACTAGTGATGGATAGATTTCCCAATGAAAATTCAGGAAAAACAGCTTCATTTGATGATTCAGTAAATGTCTCACTCTTTGATGGATCTCAGTTCAAGGTTTCTGATGATGAATTAATGCCTAATTTCGCTCTTAATGAAGGCACAGTTTGGGACCTGATTCCTGGTGTGAAACAAACCTTATATCCTCACCAACAAGAAGGCTTTGAGTTCATTTGGAAAAATTTGGCAGGAAACATCAATCTTCACAAGTTGAAGAACACCAATCCTCGCAGAGAGGGTGGCTGCATTATATCCCATGCTCCTGGTACTGGAAAGACGAGGCTGACAATAATGTTTCTCATGGCATATTTGAAAGTGTTCCCGAAATGCATGCCGGTTATCGTTGCTCCTGCAAGTTTGTTACTTACTTGGGAAGATGAGTTCAAAAAATGGGACATTGGAGTTCCATTTCACAATTTGAACAATGTCAAACTATCCGGTAACGAGCATGATGATGCTGTTAGTTTCGTTAGTTGGTCTAATAAGCGGCTGGGTAAGGATACAACACGGATGGTGAAACTGATTTCGTGGTACAAAGAAAAAAGCATTCTGGGAATCAGTTACAATTTGTACGAGAAGCTAGCCGGGGAAGGCAGGAAAAAGAAAAAACATGCAAATGTGGAGAAGAGGAAAGAAAATGGTGAAATGAGAAATGCTCTACTTGAAGCTCCTGGTTTGTTAGTGCTGGATGAAGGACACATACCGAGAAATGAAAGAAGTCTTATTTGGAATGTTTTGTCGAAAATTCAAACCCGGAAGCGGATCATCCTTTCTGGTACTCCTTTCCAGAACAATTTCTTGGAACTGTACAACATTTTGAGCTTAGTGAAGCCTTCGTTTCCTAACACGATACCGCATGAGCTGAAAAAGTTTTGCCAGAAGCAGGAATATAAAAAAGCATCTGAAGAATGGAGTTGGGAAGCCGTTTCTGGCAACTCAACATGTAACCCTTCCGATGATAAGATCAAACAATTGAAATTGCTTATGGATCCCTTTGTTCATGTTCACAAAGGTGCGATCCTTCAAAAGAAGCTTCCCGGGATAAGAGATTGTAAGCTGACTTTGAAGCCGGACAGTTTGCAGAAGCAAATTCTTGATAGCATTCAAAGTTGTCAGAACGCGTTGATCTTTGAGCGTAAGCTGACAATGGCATCGATCCATCCGTCTCTTTTCCTCGAATGCGAACTTTTGAAAGAAGAGGAATCTGGTCTTGACAAGGACCGGCTAGAAAAGCTTCGATTGAATCCATATGTTGGTGTGAAAACCAAATTTTTGGTTGAGTTTGTTAGACTTTGTAATGCAGTTAATGAGAAAGTTCTCGTGTTCAGCCAATTAATCCGTCCTTTACGCTTAATTATAGACCAATTATTGAACACGTCTTTAAAATGGACCGTAGGGAAGGAAATCCTCTACATGCATGGAGAGGTTGGTCTAAAGGAAAGACAATCTTTAATCCACAGCTTCAATGATGCTAACAGCCAAGCGAAGATTCTCTTTGCATCGACGAATGCTTGTTCCGAGGGAATTAGCTTGGTTGGAGCTTCAAGGGTTGTACTACTTGATGTCGTTTGGAATCCATCAGTCGATCGACAGGCTATCAGTAGAGCATATAGGATTGGCCAGAAAAAGGTTGTATACACTTACCATCTGCTCACTGAAGGGACTGCCGAGAAAATAAAACATCGCAAACAGGCCGAAAAGGACAGGTTATCTGAATTGATTTTTTCAGCTAAAAATGCTGATAATGATGAGTCCAAGAGTTGTGCTGTGAACTTTGAAGATAGAATTCTTGATCAGTTGAAACAACACGAAACGTTTAAAGACATGTTTGTCACAGTTCAGCCGAAGGAGCGAGATTTTGGAATGTAA 3633 0.3999 MSKESDEIDAKDGNIVEEEENDDDESESEENETSDEDFRVDVLNEISDNDDDSSSDDEKKKGYRKDEFEHASVSSSKLNEVSEILKTKSVEVKVKNVSDESVNVGVNAKSKDNVGDSDVGKDQYVKGLDAGGVSLENDSIVLEFKDNGVDRQDTQSPPVFAETTPSIWSLRKVEKVQKTKEIEDDEVNVISDNDDDSSSSSSFVHDDDDDDEEEEEEKKQEDLKKIWEECSNALEEMAREVEDKKRGISERNNEEVNIDNGPSSVNNDVSKHADHSSLTTFEKKGYFDPIKDWSSFPFPNLNEASKKCKPKSVNIKMQNVSNEDDIQVIADQPISFGHSKAHKGETNNAKAKANKNVNVGDSDEGTQQYVEGLGIGRVSPSQVKPEKTRDSDKPKMKENKGRDSKGRFRIRNGEKRETMDNNGLNKRVKSSLFMPKELHLAKLFAECYWENKNDTRKNDSIVWEVSDNGVDRRDTRPPPVSVEIPQQIWSLKKVEKVKKTKEEEEQEPLWDQMDIALREEDAVLMIGNLGTNEAKQEYMGDLSPLCEHDTRLDDEIGVYCRLCGVVITEIKYISQLVMDRFPNENSGKTASFDDSVNVSLFDGSQFKVSDDELMPNFALNEGTVWDLIPGVKQTLYPHQQEGFEFIWKNLAGNINLHKLKNTNPRREGGCIISHAPGTGKTRLTIMFLMAYLKVFPKCMPVIVAPASLLLTWEDEFKKWDIGVPFHNLNNVKLSGNEHDDAVSFVSWSNKRLGKDTTRMVKLISWYKEKSILGISYNLYEKLAGEGRKKKKHANVEKRKENGEMRNALLEAPGLLVLDEGHIPRNERSLIWNVLSKIQTRKRIILSGTPFQNNFLELYNILSLVKPSFPNTIPHELKKFCQKQEYKKASEEWSWEAVSGNSTCNPSDDKIKQLKLLMDPFVHVHKGAILQKKLPGIRDCKLTLKPDSLQKQILDSIQSCQNALIFERKLTMASIHPSLFLECELLKEEESGLDKDRLEKLRLNPYVGVKTKFLVEFVRLCNAVNEKVLVFSQLIRPLRLIIDQLLNTSLKWTVGKEILYMHGEVGLKERQSLIHSFNDANSQAKILFASTNACSEGISLVGASRVVLLDVVWNPSVDRQAISRAYRIGQKKVVYTYHLLTEGTAEKIKHRKQAEKDRLSELIFSAKNADNDESKSCAVNFEDRILDQLKQHETFKDMFVTVQPKERDFGM* 1211
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal3g1476 1210 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 661 867 IPR014001 -
Mal3g1476 1210 Coils Coil 231 254 - -
Mal3g1476 1210 Gene3D - 934 1205 IPR027417 -
Mal3g1476 1210 Pfam SNF2-related domain 653 955 IPR000330 GO:0005524|GO:0140658
Mal3g1476 1210 PANTHER SNF2 DOMAIN-CONTAINING PROTEIN CLASSY 4 177 1208 - -
Mal3g1476 1210 MobiDBLite consensus disorder prediction 11 36 - -
Mal3g1476 1210 SMART helicmild6 1043 1128 IPR001650 -
Mal3g1476 1210 MobiDBLite consensus disorder prediction 1 80 - -
Mal3g1476 1210 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 812 1167 IPR027417 -
Mal3g1476 1210 MobiDBLite consensus disorder prediction 239 253 - -
Mal3g1476 1210 MobiDBLite consensus disorder prediction 177 224 - -
Mal3g1476 1210 PANTHER SNF2 DOMAIN-CONTAINING PROTEIN CLASSY 2-RELATED 177 1208 IPR044567 GO:0080188
Mal3g1476 1210 MobiDBLite consensus disorder prediction 383 423 - -
Mal3g1476 1210 MobiDBLite consensus disorder prediction 254 274 - -
Mal3g1476 1210 MobiDBLite consensus disorder prediction 53 73 - -
Mal3g1476 1210 MobiDBLite consensus disorder prediction 374 423 - -
Mal3g1476 1210 Gene3D - 610 903 IPR038718 -
Mal3g1476 1210 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 1015 1173 IPR001650 -
Mal3g1476 1210 MobiDBLite consensus disorder prediction 239 274 - -
Mal3g1476 1210 CDD SF2_C_SNF 1006 1139 - -
Mal3g1476 1210 Pfam Helicase conserved C-terminal domain 1016 1128 IPR001650 -
Mal3g1476 1210 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 625 889 IPR027417 -
Mal3g1476 1210 SMART ultradead3 631 875 IPR014001 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal3g1476 Mal-Chr3 64820740 64825618 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal3g1476 1024 1158 RAD5 or RAD16-like Gene Family AT5G43530 37.037 3.80e-15 79.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Mal3g1476 SNF2_N 4.2e-22 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal3g1476 K10875 - gmx:100806733 850.892