Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal3g1475 ATGAGTAAGGAAAGTGATGAGATTGATGCTAAAGATGGAAACATTGTTGAAGAAGAAGAAAATGATGATGATGAAAGTGAAAGTGAAGAAAATGAGACTAGTGATGAGGATTTTAGAGTTGATGAGGTGAATGACATTTCTGAAAGTGATGATGATAGTTCTTCTGGATCCTCTTATGTTGATGATGATGATGATGATGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGAAGAAGAAGGAGAATTTGAAAAAGATTTGGGAAGAATGTTCCAATGCGTTAGAGGAGATGGCGAGAGAGGTGGAGGATAAAAAAAGGGGAATTTCTGAGAGGAATAATGAGGAGGTAAACATTGACAATAGTCCTTCTTCTGTTAACAACGACGCGGAGGATTTGAAGAAGTTTTGGAAAGAATGTGAGGAGCAGTTGACAGAGCTGGAGGATAAAAAAAGTAGAATTTCTGAGTGGAATAATGTGGAGGTAAACTTTGAATCGAAACATGCAGATAATTCTAGAGTAATAACCTTTGGTACCTTTGAGAAAAAAGGTTGTTTTGATTCAATGAAGGGTTCTTCCAACTTGAATCAAGCATCGAAGAAACGCAAATCAAAGAGTGTAGATATAAACATGCAAAATGTAGGTGAGACAAATAATGTTCAAGTTATTGCTGATAAACCCAAAAGTTTTGGTTCTTATAAGGTTCACAAGAGTGGAACAAATAATGCTAATGCCAAAACAAAAGCCAAAGATGATGCTAAAGCTAATAACAGTGTGAATGTTGGTGATTTTGATGAAGGAAAACAGCAATATGTCGACGATTTAGGTGTTGGAGGAGTTTCTCCCTCTCGAGTAAAACAAGAAAATATGAGGGATTCAGATAAACCAAAAATGGAGAATAAAGGAAGGGATTGCAAAGGCAGATTTAGGATCCGTAATGGTGAGAAGAGAGCAACCATGGATAGCAATGGTTTGAATCAAAGGGTGAAAAGCTCGCTGTTTACGCCGAAGGAGTTGCATTTAGCGAAACTCTTTGCTGAATGCTATTGGGAAAACAAGAATGATACCATAAAGAATGATTCAATTGTGTGGGAGGTCAGAGACAATGGCGTTGATCGGCAAAATACACTGCCACCATCAGTTTCTGTGGAGACACCTCCTGAACGGATATGGAGCCTTAAAAAGGTGGAAAATGTTCAAAAGACCAAGGAGGAGGAAGAGTTGGAACCATTATGGGATCAAGTGGATATATCCGTTAGAGAAGAATGTGCTGTATCAAAGATTGGAAATTTAGCGACAAATGATGCTAAACAAGAAAACATGGGAAATTCATCCCCTCTCTGTGAACATGACACTCGTCTCGACGACGAGATTGGTGTATATTGCAGATTGTGTGGTGTGGTTATCACCGAGATCAAATATATCTCCCAACTAGTGAAGGATAGATTTCCCAATGAAAATTCAGGAAAAAGAGCTTCATTTGATGATTCAGTAAATGTCTCACTCTTCGATGGATCTCAGTTCAAGGTTTCTGATGATGAATCAATGCCTAATTTCTCTCTTAATGAAGGCACAGTTTGGGACCTGATTCCTGGTGTGAAACAAACCTTATATCCTCACCAACAAGAAGGCTTTGAGTTCATTTGGAAAAACTTGGCAGGAAACATCAATCTTCACAAGTTGAAGAACACCGATCCTCGCAGAGAGGGTGGCTGCATTATCTCCCATGCTCCTGGTACTGGCAAGACACGGTTGACAATAATGTTTCTCATGTCATATTTGAAAGTTTTCCCGAAATGCATGCCGGTTATCGTTGCCCCTGCAAGTTTGTTACTTACTTGGGAAGATGAGTTCAAAAAATGGGACATTGGAGTTCCATTTCACAATTTGAACAATGTCAAACTATCCGGTAACGAGCATGATGATGCTGTTAGTTTCGTTAGTTGGTCTAATAAGCGGCTGGGTAAGGATACAACACGGATGGTGAAACTGATTTCGTGGTACAAAGAAAAAAGCATTCTGGGAATCAGTTACAATTTGTATGAGAAGCTAGCCGGGGAAGGCAGGAAAACGAAAAAACATGCAAATGTGGAGAAGAGGAAAGAAAATGGTGAAATGAGAAATGCTCTACTTGAAGCTCCTGGTTTGTTAGTGCTGGATGAAGGACACATACCAAGAAATGAAAGAAGTCTTATTTGGAATGTTTTGTCGAAAATTCAATCCCGGAAGCGGATCATCCTTTCCGGAACTCCTTTCCAGAATAATTTCTTGGAGCTGTACAACATTTTGAGCTTAGTGAAGCCTTCGTTTTCTAACACGATACCGCATGAGCTGAAAAAGTTTTGCCAGAAGCAGGAATATAAAAAAGCATCTGAAGAATGGAGTTGGGAAGCCGTTTCTGGAAACTCAACATGTAACCCTTCCGATGATAAGATCAAACAATTGAAATTGCTTATGGATCCCTTTGTTCATGTTCACAAAGGTGCGATCCTTCAAAAGAACCTTCCCGGGATAAGAGATTGTAAGCTGACTTTGAAGCCGGACAATTTGCAGAAGCAAATTCTTGATAGCATTCAAAGTTGTCAGAACGCGTTGATCTTTGAGCGTAAGCTGACAATGGCATCGATCCATCCGTCTCTTTTCCTCGAATGCGAACTTTTGAAAGAAGAGGAATCTGGTCTTGATAAGGACCGGCTAGAAAAGCTTCGATTGAATCCATATGTAGGTGTGAAAACCAAATTTTTGGTTGAGTTTGTTAGACTTTGTGATGCTGTTAATGAGAAAGTTCTTGTGTTCAGCCAACTAATCCGTCCTTTACACTTAATTATAGACCAATTATTGAACACGTCTTTAAAATGGACCGTGGGAAAGGAAATCCTCTACATGCATGGAGAGGTTGGTCTAAAGGAAAGACAATCCTTAATCCACAGCTTCAATGATGCTAACAGCCAAGCGAAGATTCTCCTTGCATCGACGAATGCTTGTTCCGAGGGAATTAGCTTGGTTGGAGCTTCAAGGGTTGTATTACTTGATGTCGTTTGGAATCCATCAGTCGATCGACAGGCTATCAGTAGAGCATATAGGATTGGCCAGAAAAAGGTTGTATACACTTACCATCTGCTCACTGAAGGGACTGCCGAGAAAATAAAACATCGCAAACAGGCCGAAAAGGACAGGTTATCTGAACTGATTTTTTCGGCTAAAAATGCTGATAATGATGAGTCCAAGAGTTGTGCTGTGAATTTTGAAGATAGAATTCTTGATCAGTTGAAACAACACGAAACGTTTAAAGACATGTTTGTCACAGTTCAGCCGAAGGATCGAGATTTTGGACTGTAA 3333 0.3987 MSKESDEIDAKDGNIVEEEENDDDESESEENETSDEDFRVDEVNDISESDDDSSSGSSYVDDDDDDEEEEEEEEEEKKKENLKKIWEECSNALEEMAREVEDKKRGISERNNEEVNIDNSPSSVNNDAEDLKKFWKECEEQLTELEDKKSRISEWNNVEVNFESKHADNSRVITFGTFEKKGCFDSMKGSSNLNQASKKRKSKSVDINMQNVGETNNVQVIADKPKSFGSYKVHKSGTNNANAKTKAKDDAKANNSVNVGDFDEGKQQYVDDLGVGGVSPSRVKQENMRDSDKPKMENKGRDCKGRFRIRNGEKRATMDSNGLNQRVKSSLFTPKELHLAKLFAECYWENKNDTIKNDSIVWEVRDNGVDRQNTLPPSVSVETPPERIWSLKKVENVQKTKEEEELEPLWDQVDISVREECAVSKIGNLATNDAKQENMGNSSPLCEHDTRLDDEIGVYCRLCGVVITEIKYISQLVKDRFPNENSGKRASFDDSVNVSLFDGSQFKVSDDESMPNFSLNEGTVWDLIPGVKQTLYPHQQEGFEFIWKNLAGNINLHKLKNTDPRREGGCIISHAPGTGKTRLTIMFLMSYLKVFPKCMPVIVAPASLLLTWEDEFKKWDIGVPFHNLNNVKLSGNEHDDAVSFVSWSNKRLGKDTTRMVKLISWYKEKSILGISYNLYEKLAGEGRKTKKHANVEKRKENGEMRNALLEAPGLLVLDEGHIPRNERSLIWNVLSKIQSRKRIILSGTPFQNNFLELYNILSLVKPSFSNTIPHELKKFCQKQEYKKASEEWSWEAVSGNSTCNPSDDKIKQLKLLMDPFVHVHKGAILQKNLPGIRDCKLTLKPDNLQKQILDSIQSCQNALIFERKLTMASIHPSLFLECELLKEEESGLDKDRLEKLRLNPYVGVKTKFLVEFVRLCDAVNEKVLVFSQLIRPLHLIIDQLLNTSLKWTVGKEILYMHGEVGLKERQSLIHSFNDANSQAKILLASTNACSEGISLVGASRVVLLDVVWNPSVDRQAISRAYRIGQKKVVYTYHLLTEGTAEKIKHRKQAEKDRLSELIFSAKNADNDESKSCAVNFEDRILDQLKQHETFKDMFVTVQPKDRDFGL* 1111
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal3g1475 1110 Coils Coil 90 113 - -
Mal3g1475 1110 MobiDBLite consensus disorder prediction 113 127 - -
Mal3g1475 1110 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 712 1067 IPR027417 -
Mal3g1475 1110 Pfam Helicase conserved C-terminal domain 920 1028 IPR001650 -
Mal3g1475 1110 PANTHER SNF2 DOMAIN-CONTAINING PROTEIN CLASSY 2-RELATED 192 1108 IPR044567 GO:0080188
Mal3g1475 1110 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 561 767 IPR014001 -
Mal3g1475 1110 MobiDBLite consensus disorder prediction 231 302 - -
Mal3g1475 1110 Coils Coil 60 85 - -
Mal3g1475 1110 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 525 788 IPR027417 -
Mal3g1475 1110 MobiDBLite consensus disorder prediction 1 83 - -
Mal3g1475 1110 Gene3D - 508 803 IPR038718 -
Mal3g1475 1110 PANTHER SNF2 DOMAIN-CONTAINING PROTEIN CLASSY 4 192 1108 - -
Mal3g1475 1110 MobiDBLite consensus disorder prediction 285 302 - -
Mal3g1475 1110 SMART ultradead3 531 775 IPR014001 -
Mal3g1475 1110 SMART helicmild6 943 1028 IPR001650 -
Mal3g1475 1110 Coils Coil 128 148 - -
Mal3g1475 1110 MobiDBLite consensus disorder prediction 98 112 - -
Mal3g1475 1110 CDD SF2_C_SNF 906 1039 - -
Mal3g1475 1110 MobiDBLite consensus disorder prediction 11 75 - -
Mal3g1475 1110 Pfam SNF2-related domain 554 854 IPR000330 GO:0005524|GO:0140658
Mal3g1475 1110 MobiDBLite consensus disorder prediction 98 127 - -
Mal3g1475 1110 Gene3D - 835 1103 IPR027417 -
Mal3g1475 1110 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 915 1073 IPR001650 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal3g1475 Mal-Chr3 64793107 64797788 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal3g1475 924 1058 RAD5 or RAD16-like Gene Family AT5G43530 37.778 1.39e-15 80.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Mal3g1475 SNF2_N 2.9e-22 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal3g1475 K10875 - gmx:100806733 869.381