Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal3g1441 ATGCTACAATTTCATCCCAACACAGACATTGTTGAGACTGATTTTGATGATGGAAAAATCCCTTTGTATGTTTTTGAGTTTGTGGATTTTGAAAAATTTGAAGAACGAGTTGACAAGGAAGTTTTGACAGATGTCATTGGAGTTATCACTGATGTAAATCCAATTGAAGAGGTTACCACTGTCAATGGTACAGTTGACAGGGTGAAACTTGAATTGAAGGATATAAGGGGAAACATCGTGAAAGTCACGTTGTGGGATGAATATGCTACAATATTTGAAGAGACGCTCAATAACAATAAGCATGACGGTCTTACCCCAAATGTTGCAGTAAATACTTCCACTGCCGTAAAGAGATTTCGAGGTGATATATGTCTTTCTGCATCAAGATCGACAAAGATTTACATCAACATAGACATTCCAAATGCAAATGAGCTCATTCCATCTTTTGGTGAATCTGGGGAAATGAGTCTCACACTTTCTACTATCCACTCCAAAATGAACAAGAACAGAACCATATCAGAGCTTTTATCTTTGGCACTGTCCGGGAGTAATTTGGATGCTGTGTATTATTGTGCAGCAACAATAACTGACATAGGGGATAGATGGTACTATGTTTCTTGCCCTAAATGTAAAAAGGGAGCTTCTGCGACTGAAACAAATTTTGACTGTGAACATTGTTCAGAAAAAATAGAATATCCGATAAACAGGTATCGTTTGGAGCTTGATGTTAAAGACTCGACAGATTCCACTATATTTGTATTGTTTGGTGAAGTTGCTGAACAAGTGGTACAGATGAAACTAAGTGACTTGATCTCAACTTTGGAAAATGAAAATGAGGATAGCTCAACAGTGCCTCATCAACTCAACAAAATCATTGGCTCCACTCATGTATTCCAAGTTAGTATGAAAAATTACTATGGTGGTCGTGGGAGACAAAGTTTCACCGTTGATAGAATTGTGAAGCCGAAAGTGAAGGTTGAGAAAGAAGACAAATCTGAAAACAATGGTGCTGCATCATGTGGTTTTCCCAATCCACGTACTCCAAAATTACCACAAAAGAGAAGGTTAAGTTTGCAAGAGGATGATGAATCATGCAGTGTGGAGCAAATCAAAGATCTGGAAGATTTGGAGGCCTGA 1137 0.3808 MLQFHPNTDIVETDFDDGKIPLYVFEFVDFEKFEERVDKEVLTDVIGVITDVNPIEEVTTVNGTVDRVKLELKDIRGNIVKVTLWDEYATIFEETLNNNKHDGLTPNVAVNTSTAVKRFRGDICLSASRSTKIYINIDIPNANELIPSFGESGEMSLTLSTIHSKMNKNRTISELLSLALSGSNLDAVYYCAATITDIGDRWYYVSCPKCKKGASATETNFDCEHCSEKIEYPINRYRLELDVKDSTDSTIFVLFGEVAEQVVQMKLSDLISTLENENEDSSTVPHQLNKIIGSTHVFQVSMKNYYGGRGRQSFTVDRIVKPKVKVEKEDKSENNGAASCGFPNPRTPKLPQKRRLSLQEDDESCSVEQIKDLEDLEA* 379
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal3g1441 378 PANTHER REPLICATION FACTOR A 1, RFA1 27 330 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Mal3g1441 378 Coils Coil 366 378 - -
Mal3g1441 378 Pfam Replication factor-A C terminal domain 192 327 IPR013955 -
Mal3g1441 378 MobiDBLite consensus disorder prediction 353 378 - -
Mal3g1441 378 PANTHER BNAA04G12470D PROTEIN 27 330 - -
Mal3g1441 378 Gene3D - 157 333 IPR012340 -
Mal3g1441 378 SUPERFAMILY Nucleic acid-binding proteins 25 151 IPR012340 -
Mal3g1441 378 MobiDBLite consensus disorder prediction 326 378 - -
Mal3g1441 378 CDD RPA1_DBD_C 172 334 IPR013955 -
Mal3g1441 378 SUPERFAMILY Nucleic acid-binding proteins 169 327 IPR012340 -
Mal3g1441 378 Pfam Replication protein A OB domain 36 135 IPR031657 -
Mal3g1441 378 Gene3D - 19 156 IPR012340 -
Mal3g1441 378 CDD RPA1_DBD_B_like 44 146 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal3g1441 Mal-Chr3 63422509 63425098 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal3g1441 16 328 Core DNA Replication Machinery Family AT4G19130 25.915 1.07e-20 92.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal3g1441 - - mtr:MTR_4g070090 333.569