Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal3g1439 ATGGGGAGTATGAGTGAACATGATAGAAAACGGAGATTTAGCTCCTTGTCACCTACACCTGCAACTGCTAAGAAGTTACCCTTCTTGCCAGTTTCTGAAGACAAGAAGCTTGATATTGCTGTACTTCAGTATCAAAACCAAAAGCTTACGCAGAAATTGGAGACTCAGAAGTTAGAATATGCAGCTCTTGAGAATAAATTTTCTCAACTGAAGGAAAAGCAACAGTCATATGATTCTACTTTAGCAGTGGTCAAGAAGTCTTGGGAGCAGCTGGTTAATGATTTAGAGTCGTGTTCTGAACGCACAAGGGAGACTACCCCCAAAGCAGATTCCAGATTTGCGTCAAGCACAGATGATGGTAGTTCGTCTACTGTTCAAGATGTTTTTCTTAGCCGACTTTTGCAAACTGGTGCAACTGAAAATTCCTCCTCTTATCACTTTGCAAACGAGATGGAACAACATAGAGAAATTACCGCTGAAAAAGCTAAAAGCATTTTGAATAATATAGTGACATCGATTAATAACTTTCAGTGTCTGAAAGATGGACTTCATACTGCACTACTGAAAAAGCTTCGAGGAGACGTTTCATGTGGACAGATGTTATCCAATGATCTCGAGGTCGAAAGTAAAAACTTGAGATTGGCATTGAGCGAACTTCACTTAAAGCACAAGTCTTTAGCAAGTGATTTCCGAACTCATAGGGATCTGGATGCCAAAAATAAAGCTGAGCTTAAACGGTTAAAAGGTGAACTGGAACACACAGTTGCAGAGTTAGAAGAAAGCAATCACAAACTTGCAACTCTTAAGGTAGAGAAAGATGCAGCCAAAGGGGCAGTTCTCCCAGTATTAGCTGTTGGGAATACACACATTCCTAATGATAAGATCAAAGACAAACAAAAGGATTTACAAGATATGGAATCTACTTTGAAGGAGCTATTGGATCAAGCTTCAACACGAGCAGTGGAACTGAAAAATCTTCATGAGGAAAGAATAAGGTTATTACAGCAATTGTGCGATCTACAGAACACAGTGAAGAATTTGAAGTGTATTACCTCTTCCCATGCATTCCAATTGGTTAAAGATCAGATAGAAAAATCAAAATCGGAAGTGCAGGAGTATCAGGCCTTATATGAGAAACTACAGGCTGAGAAGGATAGTCTTACATGGAGGGAGAGGGAGTGGTACATTAAAAATGATTTAGCTGATCTCTTTCAGAGATCTGTAGAAGTTTCTGATCTTAGAGTGGCTGATATACGCACTGAGATACAGAAAACGATAGAGCAAAGAGATGTGCTTGAAAATAAGCTGAAAGAGGAAGCAAAAGAACCAGGAAGGAAAGAAATTATTGCCGAATTTAAATCTCTTCTTTCTTCGTTTCCTGAGGAAATGGGGTCCATGCAAACTCAACTAAGTAAGTATAAAGAATCAGCTTCAGATATCCATTCTTTGCGTGCAGATGTGCATTCTATTGCCAGTATTCTCGATCGGAAGGTAAAAGAATGTGATGCATTATCTGTTAGGTCTGCTGGTCAACTTGCTGAGATAAACAGACTGCTTGCTGTGGTTCAAGATTTGCGAGTGACTGAAGATGAGATGAAGTTGTTTCTGCGAATGTTTAGAAACGAGACCATTGATTCAAGGGATGTCATGGAAGCAAGGGAATCAGAATACAGAGCATGGGCACACGTTCAAAGTTTGAAATCATCTCTTGATGAGCACAACCTAGAACGTCGAGTTAAGACAGCAAATGAATCCGAAGCCAGATCGCAGCAAAAACTTGCTGCGGCTGAAGCTGAGATTGCAGACAAGAGACATAAATTAGATGATTCTAAAAGGGAGACGTGTAAACTGTCTGATGTCTTGAAATCTAAAAATGAAGAAAACGAAGCCTACTTATCTGAAATAGAGACTATTGGACAAGCATATGATGACATGCAAACCCAAAACCAACATCTGTTGCATCAGATTACTGAGAGAGATGATTACAATATTAAGCTTGTTTTAGAAGGTGTAAGGGCTAGACAAAAACAGGATTCTTTTATCATGGAGAAGCGATTAATGGATCAAGAGATCCAGCAATCAAATGTATCTCTGAATTTATACGATACGAAAGCTGGAAGAATTGATGACCAGATGAGGTTTTGCTCAGATCAGATTCAAAAACTTGCGGACAATAAACTTCAAAGTTCTGTTGGTTTGGAAAATACACAAAGAAGGCTGTCGGATATTAGACCATCATCGCAACAGGTTAAGGATACAGTGGTGGAATTGCAATCTAAAATAGCCAGTAGTCGGGTGACTCATATGGAGTTACAAGTAGAACTCGAGAAAGAAAGGTTTGCCAAAAAAAAAGTAGAGGAAGATCTAGAGGTTGCTAGGAGAAACTTCTCACATCTTAAAGCACAAGACGAGGATTCCACAGAAACTGATAAACTTCAACAGGAACTGGGAGAGTACAAGGAAATTGTCAAGTGCAGTATCTGTCGAGACAGGACAAAAGAGGTGGTTATTACAAAATGCTACCACTTGTTCTGCAACTCATGTATCCAGAAAATTGCTGGGAGTCGGCAGCGCAAATGTCCACAATGTGGTGCATGCTTCGGGGCTAATGATGTTAAGCCGGTTTATTTGTAA 2634 0.3964 MGSMSEHDRKRRFSSLSPTPATAKKLPFLPVSEDKKLDIAVLQYQNQKLTQKLETQKLEYAALENKFSQLKEKQQSYDSTLAVVKKSWEQLVNDLESCSERTRETTPKADSRFASSTDDGSSSTVQDVFLSRLLQTGATENSSSYHFANEMEQHREITAEKAKSILNNIVTSINNFQCLKDGLHTALLKKLRGDVSCGQMLSNDLEVESKNLRLALSELHLKHKSLASDFRTHRDLDAKNKAELKRLKGELEHTVAELEESNHKLATLKVEKDAAKGAVLPVLAVGNTHIPNDKIKDKQKDLQDMESTLKELLDQASTRAVELKNLHEERIRLLQQLCDLQNTVKNLKCITSSHAFQLVKDQIEKSKSEVQEYQALYEKLQAEKDSLTWREREWYIKNDLADLFQRSVEVSDLRVADIRTEIQKTIEQRDVLENKLKEEAKEPGRKEIIAEFKSLLSSFPEEMGSMQTQLSKYKESASDIHSLRADVHSIASILDRKVKECDALSVRSAGQLAEINRLLAVVQDLRVTEDEMKLFLRMFRNETIDSRDVMEARESEYRAWAHVQSLKSSLDEHNLERRVKTANESEARSQQKLAAAEAEIADKRHKLDDSKRETCKLSDVLKSKNEENEAYLSEIETIGQAYDDMQTQNQHLLHQITERDDYNIKLVLEGVRARQKQDSFIMEKRLMDQEIQQSNVSLNLYDTKAGRIDDQMRFCSDQIQKLADNKLQSSVGLENTQRRLSDIRPSSQQVKDTVVELQSKIASSRVTHMELQVELEKERFAKKKVEEDLEVARRNFSHLKAQDEDSTETDKLQQELGEYKEIVKCSICRDRTKEVVITKCYHLFCNSCIQKIAGSRQRKCPQCGACFGANDVKPVYL* 878
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal3g1439 877 Coils Coil 39 80 - -
Mal3g1439 877 MobiDBLite consensus disorder prediction 109 123 - -
Mal3g1439 877 PANTHER E3 UBIQUITIN-PROTEIN LIGASE BRE1-LIKE 1 1 877 - -
Mal3g1439 877 SMART ring_2 825 863 IPR001841 -
Mal3g1439 877 Coils Coil 295 315 - -
Mal3g1439 877 Coils Coil 241 278 - -
Mal3g1439 877 CDD RING-HC_BRE1_like 823 864 - -
Mal3g1439 877 SUPERFAMILY RING/U-box 817 876 - -
Mal3g1439 877 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 805 877 IPR013083 -
Mal3g1439 877 Coils Coil 356 390 - -
Mal3g1439 877 MobiDBLite consensus disorder prediction 1 28 - -
Mal3g1439 877 Coils Coil 579 613 - -
Mal3g1439 877 Coils Coil 775 802 - -
Mal3g1439 877 Pfam Zinc finger, C3HC4 type (RING finger) 825 863 IPR018957 GO:0046872
Mal3g1439 877 MobiDBLite consensus disorder prediction 97 123 - -
Mal3g1439 877 ProSiteProfiles Zinc finger RING-type profile. 825 863 IPR001841 -
Mal3g1439 877 Coils Coil 415 442 - -
Mal3g1439 877 ProSitePatterns Zinc finger RING-type signature. 840 849 IPR017907 -
Mal3g1439 877 PANTHER RING FINGER PROTEIN-RELATED 1 877 IPR013956 GO:0004842|GO:0010390
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal3g1439 Mal-Chr3 63365215 63386732 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal3g1439 795 876 C3H Transcription Factor Family AT2G42030 32.530 3.09e-09 58.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal3g1439 K10696 - gmx:100790337 1353.19