Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal3g1433 ATGAATCTGAGATACGAACAGAGGCTCCAAGCCGCCGCTAAAATAATACTCGACGACGGCGCAAGTGTCGGCGACGCGCCGCCGAGTGAAGAAGAGCTTGGGATTAAAGCAACACTCAAGGCGCATCAAGTGGACGGGGTTTCGTGGCTTATTCGGAAGTATAAACTCGGCGTCAACGTTGTTCTTGTGGTTATATGTCCTTTAAGTGTGACAGATGGTTGGGTGTCTGAGATAGTTAAATATGCCCCTAAACTAGAAGTCTTTAAATATGTTGGTGATAAAGAATATAGGCGTAGTCTACGCATGAAAACACATGACCATGTATCAAAGCAGCCAACACTTAATGTCATGTTGCCTTTTGATGTGCTGCTAACATCATATGACATTGCACTGATGGATAAGGATTTTCTTTCTCAAATACCATGGCAGTATGCAATCATCGATGAAGCTCAAAGGCTTAAAAACCCGTCAAGTGTTTTATTTAATGTTCTCAAAGATCGCTATATCATGCCAAGACGGTTGTTGATGACTGGTACACCTATTCAGAACAACCTTTCTGAACTGTGGGCGTTGATGCATTTTTGCATGCCATCTGTTTTTGGGACACTAGATCAGTTCCTTTCTACATTCAAGGACATAAGTGATCTTACCTCAGTTCATGATTCTCCAATGGTAAAGGAGCGACTTCAAATCCTGAGAAGTGTATTGGCTGCTTTTATGCTTCGACGAACCAAATCAAAGCTTATGGAGTGTGGAAGTTTAGTGCTGCCACCTCTCACTGAGACAACTGTGTTAGTACCTCTTGTTATCCTGCAAAAAAAGGTCTACATGTCAATACTGAGGAAGGAGCTTCCGAAACTAGTCGCACTATCTTCTGGAACATCAAATCACCAATCACTACAGAATACTGTGATACAACTCAGAAAAGCATGCAGCCATCCTTATCTCTTTCCGGGTATTGAACCCGAACCTTATGAAGAAGGTGAACATCTGGTTCAGGCCAGTGGTAAACTACTGATTCTGGACCAACTTCTTCGAAAGCTACATCATAATGGACATCGTGTTCTTCTTTTTGCTCAGATGACTCATACACTTGACATTTTGCAGGATTTTCTGGAGTTACGTAAGTACTCTTACGAGCGTCTTGATGGATCAATTAGGGCTGAGGAGCGCTTTTCTGCAATAAGAAGCTTCAGCAACTCATCAGCTAATACGGGCTTGAATTTTGAAGAAGACCAAAATGGAGCTTTTGTTTTTATGATCTCAACAAGAGCTGGGGGAGTTGGCTTGAATCTTGTAGCTGCTGATACTGTTATATTCTACGAGCAAGATTGGAACCCTCAGGTGGACAAACAAGCTTTGCAGAGAGCACATAGAATTGGCCAGATGAATCATGTTTTGTGTGTAAACCTTGTTACTGAACATACAGTGGAGGAAGTAATTATGCGGAGGGCAGAAAGAAAATTGCAGCTGAGCCTAAATGTTACAGGTGATAATATTGTGGAACATGAAGATAAACAATTATCTTCAGTTGGAACTGGTGATTTAAAATCCATAATAGTTGGGTTACGTATGTTTGATCCCAATGAAATCAATGATGGAAAAGACAAGGACATGGACTTAACAGAAATTAATGCAATGGCTGACAAGGTGATTGATATTCGTAATGAACAAATATTTGATAAGGATGACAGGAAATTTGAGGTCAATCCAAGAAACTTTTTAAAAGGGTATGATGTTAAGGAAAGAGGTTCTGATTCTCTCTCTTGTGATCTTGATCTTGATGAGGCTTCATATCTTTCCTGGGTTAAAAAATTTGAGGAAGTTTCTAAATCAAGTTGCGATTCAATCATTGACTTAAGAAGCAAAAGAAACTTAGATGAGGAAAAGAGTAAAAAAATTGAAGCTGCAAAGAAGAAGGCGGAAGAAAAGAAGCTGTCTAAGTGGAATGCTGTAGGATACCAGTCATTGAATGTGCAAGACCCTATTAGCCCGCCAGATGGGGATGTCATATCCGATGATGGTTCTGTTCATTTTGTCTATGGAGATTGTACAGCTCCTACAAACGTTTCTTCATCTGAACCTGCTTTAGTATTCAGCTGTGTTGACACCTCTGGACGTTGGGGCAATGGTGGAATGTTTAATGCACTGACTAAGCTTTCCTCAAGCATCAGCGATGCATATGAACGGGCTTCTGAACATGGGGATCTGCATCTCGGTGATCTCCATCTTATAAGGCTTGAAGATGGCTGTGATGATCAAAATTTGGATGGTAATGCTCCCAAAATGGTTGCTTTAGCTGTGGTTCAATCTTACAATCCTAGGCGTAAAGTCCCTCGAAGTGAAATATCACTTAGCCACTTGGAAAGCTGCTTATCAAAGGCAGCATTCTCTGCTGCTCAAAATTCTGCTTCAATACACATGCCACGGATTGGTTATCAAGATGGATCTGATCGTTCTCAATGGTACACCATAGAACGGCTTCTAAGAAAATATGCCTCCATGTACGACGTAAATATATACGTGTATTATTATCGAAGACAACGTTAA 2550 0.4082 MNLRYEQRLQAAAKIILDDGASVGDAPPSEEELGIKATLKAHQVDGVSWLIRKYKLGVNVVLVVICPLSVTDGWVSEIVKYAPKLEVFKYVGDKEYRRSLRMKTHDHVSKQPTLNVMLPFDVLLTSYDIALMDKDFLSQIPWQYAIIDEAQRLKNPSSVLFNVLKDRYIMPRRLLMTGTPIQNNLSELWALMHFCMPSVFGTLDQFLSTFKDISDLTSVHDSPMVKERLQILRSVLAAFMLRRTKSKLMECGSLVLPPLTETTVLVPLVILQKKVYMSILRKELPKLVALSSGTSNHQSLQNTVIQLRKACSHPYLFPGIEPEPYEEGEHLVQASGKLLILDQLLRKLHHNGHRVLLFAQMTHTLDILQDFLELRKYSYERLDGSIRAEERFSAIRSFSNSSANTGLNFEEDQNGAFVFMISTRAGGVGLNLVAADTVIFYEQDWNPQVDKQALQRAHRIGQMNHVLCVNLVTEHTVEEVIMRRAERKLQLSLNVTGDNIVEHEDKQLSSVGTGDLKSIIVGLRMFDPNEINDGKDKDMDLTEINAMADKVIDIRNEQIFDKDDRKFEVNPRNFLKGYDVKERGSDSLSCDLDLDEASYLSWVKKFEEVSKSSCDSIIDLRSKRNLDEEKSKKIEAAKKKAEEKKLSKWNAVGYQSLNVQDPISPPDGDVISDDGSVHFVYGDCTAPTNVSSSEPALVFSCVDTSGRWGNGGMFNALTKLSSSISDAYERASEHGDLHLGDLHLIRLEDGCDDQNLDGNAPKMVALAVVQSYNPRRKVPRSEISLSHLESCLSKAAFSAAQNSASIHMPRIGYQDGSDRSQWYTIERLLRKYASMYDVNIYVYYYRRQR* 850
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal3g1433 849 Coils Coil 624 644 - -
Mal3g1433 849 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 141 505 IPR027417 -
Mal3g1433 849 CDD Macro_Poa1p-like_SNF2 676 834 - -
Mal3g1433 849 Pfam SNF2-related domain 62 316 IPR000330 GO:0005524|GO:0140658
Mal3g1433 849 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 30 243 IPR027417 -
Mal3g1433 849 SMART helicmild6 366 461 IPR001650 -
Mal3g1433 849 Gene3D - 255 566 IPR027417 -
Mal3g1433 849 Gene3D Leucine Aminopeptidase, subunit E, domain 1 676 849 IPR043472 -
Mal3g1433 849 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 340 508 IPR001650 -
Mal3g1433 849 SMART ultradead3 35 206 IPR014001 -
Mal3g1433 849 CDD SF2_C_SNF 329 472 - -
Mal3g1433 849 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 63 198 IPR014001 -
Mal3g1433 849 PANTHER HELICASE CHR10-RELATED 5 844 - -
Mal3g1433 849 Gene3D - 61 254 IPR038718 -
Mal3g1433 849 PANTHER CHROMODOMAIN-HELICASE-DNA-BINDING PROTEIN 3-RELATED-RELATED 5 844 - -
Mal3g1433 849 Pfam Helicase conserved C-terminal domain 337 461 IPR001650 -
Mal3g1433 849 SUPERFAMILY Macro domain-like 677 844 IPR043472 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal3g1433 Mal-Chr3 62680029 62688807 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal3g1433 335 491 RAD5 or RAD16-like Gene Family AT5G22750 33.758 5.79e-20 94.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Mal3g1433 SNF2_N 1.6e-40 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal3g1433 K20092 - gmx:100797182 1301.19