Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal3g1401 ATGGACTTTGGAGGGAACATGTTCTGTCTCAACAACAGAGACCAAAGTAATAACAATAACGGTAACAGTAACGGTTTTACTTGGGGTAGTAGTAGTGGTAGTACTACTACTACTAGTACTACATGGAACATGAATACTTTCAATGTTACTACTGAAAACAATCCAGTCTCCGCCGCCAACCGTAACGAGGCAGGTCTAGCAAACGCGCTTATGTTCCTGCCTCAAAATGAAGGCGGCAGACGACAGCATAGGAGTGCATACGGCGGAGGTGTATCTCGGGGTCACGTGATGCCTGATCCACACCTCACGTGTTTGAAGTTGGGGAAGAGGCATTATTTTGAAGATGTGAGTGGTGGTGGGGGGTTGGTGGTGGAGAAGAGAGGTAAAGGGTACTGTGGTGGTGGTGGTAGTGGTGGGAAGACGGCGGCGGTGGTGGGTTATACGGCGGTGGCGAGATGTCAGGTGGATGGGTGCCACGTGGGATTGATGAATGCTAAGGAGTATCATAGGAGACATAAGGTTTGTGAGATGCATTCAAAGGCACCAAAAGTTGTGGTGTTGGGTTTAGAGCAGAGATTCTGTCAACAGTGTAGCAGGTTCCATGTTGTGTCAGAGTTTGATGATTCAAAAAGAAGTTGTAGAAGGAGACTCGCAGGGCACAATGAGAGAAGAAGAAAGAGCTCCCATGATTCTGTTGGGAGGAATTCATCACAAGGTGGATGTGCTCTCTCTCTTCTGTCATCTCAGACTGATTCATGGCTTTCACCGGCTGACCTCTCCGTAAGATGCAGTGCTGCATTAAGCGAATTGATTGCAGAAAACCGAGCAGCCATAATGGCTAGGCAATATGTCTCAGACAGAGACTGGCATTTGCAGCACCATGCCGTCGAGGACTACAAGGAGATCCAACCCGAGTCCAATTATTTCCCACAACAGATGTTTCCGCAGACACATTAG 957 0.4807 MDFGGNMFCLNNRDQSNNNNGNSNGFTWGSSSGSTTTTSTTWNMNTFNVTTENNPVSAANRNEAGLANALMFLPQNEGGRRQHRSAYGGGVSRGHVMPDPHLTCLKLGKRHYFEDVSGGGGLVVEKRGKGYCGGGGSGGKTAAVVGYTAVARCQVDGCHVGLMNAKEYHRRHKVCEMHSKAPKVVVLGLEQRFCQQCSRFHVVSEFDDSKRSCRRRLAGHNERRRKSSHDSVGRNSSQGGCALSLLSSQTDSWLSPADLSVRCSAALSELIAENRAAIMARQYVSDRDWHLQHHAVEDYKEIQPESNYFPQQMFPQTH* 319
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal3g1401 318 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 29 318 - -
Mal3g1401 318 ProSiteProfiles Zinc finger SBP-type profile. 150 227 IPR004333 GO:0003677
Mal3g1401 318 SUPERFAMILY SBT domain 151 232 IPR036893 GO:0003677|GO:0005634
Mal3g1401 318 Pfam SBP domain 153 226 IPR004333 GO:0003677
Mal3g1401 318 Gene3D - 144 214 IPR036893 GO:0003677|GO:0005634
Mal3g1401 318 MobiDBLite consensus disorder prediction 217 237 - -
Mal3g1401 318 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 29 318 IPR044817 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal3g1401 Mal-Chr3 60732011 60736089 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal3g1401 104 226 SBP-box Gene Family AT1G27360 55.285 1.01e-38 139
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Mal3g1401 SBP 4.7e-32 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal3g1401 - - cam:101496293 455.677