Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal3g1378 ATGGCTCTGGCTTTAGCTCAAACATTCTCTCATATACTCATTTTCATAGGTTCACTCTCAATATTCCTAATGACCCCTTCCTCTTGTATTAATCCTAGGAAGCTTCTTAATGGCACTTCCAATTCCTCGATTGATTTAGATTTTTTATCTTCATTAGTTGGTTTTTATGGACCTCCCAACGGTGATGGAAGTGAAGGTGGTGCTTGTAATTATGGAAATGTTGTTGGGCTGCCTCCATTCAACTCAATGGTATCGGCCGGAAGCCCTGCAATCTTTCAATCGGGCAAAGGATGTGGTACTTGTTATCAGATTAAGTGCACAGGAAATCCTGCTTGCTCAGACAACCCTGTTACTGTAGTTATAACTGATGAGTGTCTTGGTTGTAATAATTTTGATATGAGTGGTAAAGCTTTTGGTGCCATGGCAGTTTCAGGTCAAGCTGACAACCTACGCAATGCTGGCAAAGTTGCCGTAGAATATACGAGAGTTCTATGCAACTACCCTGGAGTACCAATAACTTTCCGTGTGGATGCTGGCTCCAACCAAGATTTTTTTGCTATCTTAGTTGAATATGAGGATGGGGATGGTGATCTCAAAACAGTTGAACTTAAAGAAGCACCTAGCTCAGCAACTTATCAAAGCATGCAACGATCATTTGGTGCTGTTTGGAAATTAAATAAAAGGACACCATTGATAGCACCATTTTCTCTAAGGCTAACACAAATTGAGTCTGGCAAGGTATATGAAGCCAAGAATGTGATCCCTGTAGGTTGGAGGCCTGGTCAAACTTTTAGAGCAATTGGGAATTTTAATTAA 816 0.4069 MALALAQTFSHILIFIGSLSIFLMTPSSCINPRKLLNGTSNSSIDLDFLSSLVGFYGPPNGDGSEGGACNYGNVVGLPPFNSMVSAGSPAIFQSGKGCGTCYQIKCTGNPACSDNPVTVVITDECLGCNNFDMSGKAFGAMAVSGQADNLRNAGKVAVEYTRVLCNYPGVPITFRVDAGSNQDFFAILVEYEDGDGDLKTVELKEAPSSATYQSMQRSFGAVWKLNKRTPLIAPFSLRLTQIESGKVYEAKNVIPVGWRPGQTFRAIGNFN* 272
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal3g1378 271 SUPERFAMILY PHL pollen allergen 172 265 IPR036749 -
Mal3g1378 271 PRINTS Major pollen allergen Lol pI signature 86 97 IPR005795 GO:0005576|GO:0019953
Mal3g1378 271 PRINTS Major pollen allergen Lol pI signature 174 189 IPR005795 GO:0005576|GO:0019953
Mal3g1378 271 PRINTS Major pollen allergen Lol pI signature 242 259 IPR005795 GO:0005576|GO:0019953
Mal3g1378 271 PRINTS Major pollen allergen Lol pI signature 106 116 IPR005795 GO:0005576|GO:0019953
Mal3g1378 271 PRINTS Major pollen allergen Lol pI signature 190 205 IPR005795 GO:0005576|GO:0019953
Mal3g1378 271 PRINTS Major pollen allergen Lol pI signature 142 157 IPR005795 GO:0005576|GO:0019953
Mal3g1378 271 Pfam Expansin C-terminal domain 172 255 IPR007117 -
Mal3g1378 271 Pfam Lytic transglycolase 85 160 IPR009009 -
Mal3g1378 271 Gene3D - 37 166 IPR036908 -
Mal3g1378 271 PRINTS Expansin/Lol pI family signature 252 266 IPR007118 GO:0005576
Mal3g1378 271 PRINTS Expansin/Lol pI family signature 153 169 IPR007118 GO:0005576
Mal3g1378 271 PRINTS Expansin/Lol pI family signature 65 83 IPR007118 GO:0005576
Mal3g1378 271 PRINTS Expansin/Lol pI family signature 212 226 IPR007118 GO:0005576
Mal3g1378 271 PRINTS Expansin/Lol pI family signature 88 106 IPR007118 GO:0005576
Mal3g1378 271 PRINTS Expansin/Lol pI family signature 47 62 IPR007118 GO:0005576
Mal3g1378 271 PANTHER EXPANSIN-B3 12 270 - -
Mal3g1378 271 SUPERFAMILY Barwin-like endoglucanases 49 169 IPR036908 -
Mal3g1378 271 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 183 266 IPR007117 -
Mal3g1378 271 Gene3D - 168 270 IPR036749 -
Mal3g1378 271 SMART dpbb_1 84 160 IPR007112 -
Mal3g1378 271 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 66 170 IPR007112 -
Mal3g1378 271 PANTHER EXPANSIN-B2-RELATED 12 270 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal3g1378 Mal-Chr3 59705402 59706943 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal3g1378 27 270 Expansin Gene Family AT1G65680 53.226 3.23e-92 272
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal3g1378 - - gmx:548090 349.747