Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal3g1375 ATGTTAATACTATCTAGGTCAATCCACCATTTTTTGAGCTTTAAATTTCATCATTTTATGGACAAATACAAGTGCAAACTTTGCTCTAGAAGCTTCAACAATGGAAGAGCATTGGGGGGTCACATGAGATCTCATATGATGAATCTTCTTGTTACAAAGCAAGAAGAAGATTCATCGCGAATGGTTCAACTTAGTTTTGAAGCTGAATCAACACCATCTTCATCATCGTCATCTGACGATGATGAAAAGGGTCTTAATTATGGCCTTAGAGAGAATCCAAAGAGAAGCATTCGTATCGTAGATCAAGACTTTTCTTTTCCACAAGTGGATACAAGTTCTGTGATTCTTCAAGATATAGAAAGCGAAACTGAATCATCGAAGAATAATCCAACTCGAAGAAGATCCAAAAGGGTGTGGAAAATTCGCGGGTTTGATCAAAAGTATTACAATGAATCTGCTAGTAAGAAAATGAAATTTTTTAATAAGAATGATTCTTCGGTTGTTGAACATGAACCTATTAGTTCAGTTTCTGATGCAACAACCGAAGAAGATGTTGCATTTTGTCTAATGCAATTGTCCAGAGACAAATGGAATAGACAAAATGAAGACGTAGAAGAAGAACAAGAACAAACAGATTATGAGGATGATGATGACGATGAAGAAGCTGAAGAAGAGCAAGAAGATGAAATTGAAAAATCTTTGGAAGATAGTGATGAATCTCAAGAGCTACTAAAAGTGTGCAAGAATAATAACAAAGTGCGTAAAGGAAGATACAAATGTGAAACATGTAATAAAATGTTTAAATCTTATCAAGCATTGGGTGGTCATAGAGCTAGTCACAAGAAAATTAAACTTAACACAACAACGGTGGAAGAATCATCACCAGAATTCGAAGTTGTCGAAAAGAAAGTTCATGAATGTCCGGTTTGTTTTCGAGTATTTAATTCGGGTCAAGCACTTGGTGGACACAAAAGAACACATGTGATTCATGGATCAACAACAACAGTTCCAATTTTTAGCTCAAAAAGAGTTGCAAAAAGTGTTATAGATCTTAACCTTCCTGCTCCAATTGATGATGATGAGGTTAGTCAAATTGAGAATTCTGCAGTTTCTGATGCAGAATTTGTCAAAACTCATTAA 1140 0.3509 MLILSRSIHHFLSFKFHHFMDKYKCKLCSRSFNNGRALGGHMRSHMMNLLVTKQEEDSSRMVQLSFEAESTPSSSSSSDDDEKGLNYGLRENPKRSIRIVDQDFSFPQVDTSSVILQDIESETESSKNNPTRRRSKRVWKIRGFDQKYYNESASKKMKFFNKNDSSVVEHEPISSVSDATTEEDVAFCLMQLSRDKWNRQNEDVEEEQEQTDYEDDDDDEEAEEEQEDEIEKSLEDSDESQELLKVCKNNNKVRKGRYKCETCNKMFKSYQALGGHRASHKKIKLNTTTVEESSPEFEVVEKKVHECPVCFRVFNSGQALGGHKRTHVIHGSTTTVPIFSSKRVAKSVIDLNLPAPIDDDEVSQIENSAVSDAEFVKTH* 380
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal3g1375 379 ProSitePatterns Zinc finger C2H2 type domain signature. 25 45 IPR013087 -
Mal3g1375 379 MobiDBLite consensus disorder prediction 205 236 - -
Mal3g1375 379 ProSiteProfiles Zinc finger C2H2 type domain profile. 305 327 IPR013087 -
Mal3g1375 379 Coils Coil 194 214 - -
Mal3g1375 379 SUPERFAMILY beta-beta-alpha zinc fingers 257 327 IPR036236 -
Mal3g1375 379 Gene3D Classic Zinc Finger 255 327 - -
Mal3g1375 379 MobiDBLite consensus disorder prediction 64 88 - -
Mal3g1375 379 Pfam C2H2-type zinc finger 304 327 - -
Mal3g1375 379 Pfam C2H2-type zinc finger 23 46 - -
Mal3g1375 379 Pfam C2H2-type zinc finger 257 282 - -
Mal3g1375 379 Coils Coil 223 243 - -
Mal3g1375 379 Gene3D Classic Zinc Finger 6 83 - -
Mal3g1375 379 PANTHER ZINC FINGER PROTEIN ZAT1-RELATED 20 377 IPR044303 GO:0006355
Mal3g1375 379 SUPERFAMILY beta-beta-alpha zinc fingers 22 47 IPR036236 -
Mal3g1375 379 ProSitePatterns Zinc finger C2H2 type domain signature. 260 280 IPR013087 -
Mal3g1375 379 MobiDBLite consensus disorder prediction 198 238 - -
Mal3g1375 379 ProSiteProfiles Zinc finger C2H2 type domain profile. 23 45 IPR013087 -
Mal3g1375 379 ProSitePatterns Zinc finger C2H2 type domain signature. 307 327 IPR013087 -
Mal3g1375 379 MobiDBLite consensus disorder prediction 64 82 - -
Mal3g1375 379 ProSiteProfiles Zinc finger C2H2 type domain profile. 258 285 IPR013087 -
Mal3g1375 379 PANTHER CYS2/HIS2 ZINC-FINGER TRANSCRIPTION FACTOR 20 377 - -
Mal3g1375 379 SMART c2h2final6 258 280 IPR013087 -
Mal3g1375 379 SMART c2h2final6 23 45 IPR013087 -
Mal3g1375 379 SMART c2h2final6 305 327 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal3g1375 Mal-Chr3 59627737 59631797 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal3g1375 20 365 C2H2 Transcription Factor Family AT3G60580 42.978 9.86e-70 219
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Mal3g1375 zf-C2H2_6 1.2e-10 CL0361
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mal3g1375 3 59627737 59631797 Mal7g0880 7 24027144 24028298 PCT