Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal3g1373 ATGTCGAATTTGTACGGTGATTACAACCAAAAGATCGATTATGTGTTCAAGGTTGTATTGATTGGTGATTCAGCAGTTGGTAAAACTCAATTACTCGCTCGTTTTGCAAGAAACGAATTTAAAGTTGATTCTAAGGCCACAATTGGTGTTGAATTTCAAACCAAAACTTTGATTATTGATAATAAAACTGTTAAGGCTCAAATATGGGATACCGCAGGTCAAGAAAGGTACAGGGCAGTTACTAGTGCGTACTATCGAGGTGCAGTTGGTGCAATGTTAGTTTACGACATGACAAAGCGTCAATCGTTCGACCACATGGCCAGATGGTTGGAAGAATTGAGAGGCCACGCCGACAAAAACATCGTCATCATGCTAATCGGTAACAAATGTGATCTTTCTAGTCTTAGAGCAGTTCCAACAGAAGACGCAGAGGAGTTTGCGCAAAGAGAGAACCTCTTCTTTATGGAGACATCAGCACTTGAAGCCACCAACGTTGAAACTTGTTTTTTGACGATTTTAACCGAGATATACCGAATAAATGCAAAAAAACCACTTACTTCGAATGGCGACGCAGATCAAAATGGGACTTCGCTTATGAAGGGAAGTCGGATAATTGTTCCTGGTAATGAAACGGATGGTGGCGGAAAGAAGGGTTGCTGTTTTGGTTCTTAG 672 0.4092 MSNLYGDYNQKIDYVFKVVLIGDSAVGKTQLLARFARNEFKVDSKATIGVEFQTKTLIIDNKTVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLEELRGHADKNIVIMLIGNKCDLSSLRAVPTEDAEEFAQRENLFFMETSALEATNVETCFLTILTEIYRINAKKPLTSNGDADQNGTSLMKGSRIIVPGNETDGGGKKGCCFGS* 224
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal3g1373 223 SMART rho_sub_3 18 175 IPR001806 GO:0003924|GO:0005525
Mal3g1373 223 ProSiteProfiles small GTPase Rab1 family profile. 11 220 - -
Mal3g1373 223 PANTHER - 1 221 - -
Mal3g1373 223 PANTHER BNAA05G26830D PROTEIN 1 221 - -
Mal3g1373 223 SMART rab_sub_5 16 179 - -
Mal3g1373 223 SMART ran_sub_2 21 214 - -
Mal3g1373 223 Pfam Ras family 17 177 IPR001806 GO:0003924|GO:0005525
Mal3g1373 223 CDD Rab11_like 13 177 - -
Mal3g1373 223 ProSiteProfiles small GTPase Rho family profile. 9 181 - -
Mal3g1373 223 SMART arf_sub_2 1 181 - -
Mal3g1373 223 TIGRFAM small_GTP: small GTP-binding protein domain 15 171 IPR005225 GO:0005525
Mal3g1373 223 SMART ras_sub_4 13 179 - -
Mal3g1373 223 PRINTS Transforming protein P21 ras signature 39 55 - -
Mal3g1373 223 PRINTS Transforming protein P21 ras signature 16 37 - -
Mal3g1373 223 PRINTS Transforming protein P21 ras signature 154 176 - -
Mal3g1373 223 PRINTS Transforming protein P21 ras signature 57 79 - -
Mal3g1373 223 PRINTS Transforming protein P21 ras signature 119 132 - -
Mal3g1373 223 ProSiteProfiles small GTPase Ras family profile. 10 199 IPR001806 GO:0003924|GO:0005525
Mal3g1373 223 Gene3D - 8 220 IPR027417 -
Mal3g1373 223 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 11 183 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal3g1373 Mal-Chr3 59615344 59618206 Dispersed/Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal3g1373 K07904 - zju:107432426 398.282
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mal5g0259 5 4368520 4369422 Mal3g1373 3 59615344 59618206 PCT