Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal3g1336 ATGGATCTTACTTTAGCACATGCATTCTTTCATATACTCATCTTTGTAGGCTCAATTTCAATATTCCTAGTGACCCCTTCCTATGGTCTTAATCCTAGGAAGCTTCTTAATGTCACATTAAACTCCTCCACTGGTTCACCTTTTTCTTCTTCTTCATTGGCTAGTTTTTATGGACCTCCCAACGGTGATGGAAGTGAAGGTGGTGCTTGTGGATATGGAAATGTTGTTGGGCTGCCTCCATTCATCTCATTGATATCGGCCGGAGGCCGTGCCATATTTAAATCGGGGAAAGGATGTGGCACTTGTTATCAGGATGGGGATGGTGATCTAAAAACAGTAGAACTTAAAGAAGCTCGCTCAACAACTTATGAAAGTATGCAACAATCATTTGGTGCTGTTTGGAAATTGAATAAAGGGGCACCACTGATAGCACCATTTTCTATAAGGCTAACAACGATTGAGTCTGGCAAGGTATTTGAAGCAAAGAATGTGATCGCTTTTGGTTGGATACCTGGTCAAACTTTTAGAGCAATTGGGAATTTTAATTAA 549 0.4044 MDLTLAHAFFHILIFVGSISIFLVTPSYGLNPRKLLNVTLNSSTGSPFSSSSLASFYGPPNGDGSEGGACGYGNVVGLPPFISLISAGGRAIFKSGKGCGTCYQDGDGDLKTVELKEARSTTYESMQQSFGAVWKLNKGAPLIAPFSIRLTTIESGKVFEAKNVIAFGWIPGQTFRAIGNFN* 183
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal3g1336 182 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 103 177 IPR007117 -
Mal3g1336 182 SUPERFAMILY Barwin-like endoglucanases 43 104 IPR036908 -
Mal3g1336 182 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 67 104 IPR007112 -
Mal3g1336 182 SUPERFAMILY PHL pollen allergen 102 176 IPR036749 -
Mal3g1336 182 Pfam Expansin C-terminal domain 103 165 IPR007117 -
Mal3g1336 182 PANTHER EXPANSIN-B3 10 104 - -
Mal3g1336 182 PRINTS Expansin/Lol pI family signature 48 63 IPR007118 GO:0005576
Mal3g1336 182 PRINTS Expansin/Lol pI family signature 89 107 IPR007118 GO:0005576
Mal3g1336 182 PRINTS Expansin/Lol pI family signature 66 84 IPR007118 GO:0005576
Mal3g1336 182 PANTHER EXPANSIN-B2-RELATED 103 181 - -
Mal3g1336 182 PANTHER EXPANSIN-B2-RELATED 10 104 - -
Mal3g1336 182 Gene3D - 100 181 IPR036749 -
Mal3g1336 182 PANTHER EXPANSIN-B3 103 181 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal3g1336 Mal-Chr3 58366996 58368459 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal3g1336 103 181 Expansin Gene Family AT1G65680 48.750 3.11e-19 80.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal3g1336 - - cam:101502552 214.542