Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal3g1279 ATGGCTAATCTTCTTAAGTTTTCTCCAATTTCTGAAATCTCAAGTCAAAAAACATTTTGGAACCTTAAGGGCAAAGTCATACGTTTGTGGCGTGTATCAGATTTTAACCATAGCGCTCTGCCATTTTCAATTGAAATGGTTTTGCTTGATGAGGCTGGTAACAAGATTCACGCCTCAATTAAGAAAACATTACTTTACAAATTCAAAAACAACATTTTTGAAGGAAAATGTTACAACTTTGAAAACCTTGGTGTAGCTATCAATGGTGGGAGCTACGGAACTACAAGACACGGTTACAAATTGAATTTTCAGTTTAGTAGCAAGGTTCAATATCTCCCAAATCTGAAAATCATTAGGTCTCCTTACAACTTAATACCAATATCTGAAATTGTTGGAGGAAGTTTTGATTTTGACTATTTGCCTGACGTGATTGGTGTTATTTCTGGAGTGGGTACTGAAAGGGAATTGGAAAGAAATGGTAGCACTACAAAGTTGAATGTTATTGAACTTGAAGCAGAAGGGCATAAGATAAAATGTACCCTGTTTGGAAGCTATGTTGACGAGCTTAATAGTTTCATTGCAAGTGGAGAGAATCAAAATGCTATTGTCATTGTTCAACTGGCCAAAGCCAAGACTTTTCAAGATAAAATACATTTGCAAAATTGTCTAAATTGCACAAAATTGGTTTTCAACCCTACTTTCCCTGATGGTATAAGCTTTAGGAACAGGCTTGCTGAAATTGTGGACACACCTTCACCCCTTGCTTTAACACAATTGCAACCTGAACAAAGGGTTGAACCTAGGGATGACTTTCTCTTTAATACACAAAGAAGAACAATGCAAGGGCTTAAGGATTCATCAACTGATTCTGTCTATGTTGTTATTGGTACTGTAGAGAGGATTGTGAATCAAGAAAACTTTTGGTACACCGCCTGCATATGCTCTAAAGCTGTCATACCTGACTCCCAAATGTTTTTTTGTGAGAAATGTGACAAGCATGTGAAGAAGGTTTTTCCTAGGTATTACTTAAAGATTAGAGCTATTGACCACACTGACTGTGCCACTCTGGTCATCTTTGACAAAGAATGCACATCCCTTTTTAACAAAAGCTGTGTTGACATGCTTTCTCAACATGAGCAGGTTGTATCTGAGGGTCAGCTTCCTCCTCCGATGCATGCACTTATTGGGCAAACATATCTTTTCAAAGTTGAGACTAAGGCTAATTTTAGTCCAAGATTTGAAAGATCCTTTCGTGTGAAAAAGATTTGTGTTGACCCTGTTGTGATTAATGAGTTTAAGAAAAAATGGGATCGTGAAGAGGCTTCATTTGCCAAACATGCAAATGAGAGTGCATCTCTTAGTGTTTTGATGGACAAAGGAAAAACACCAATGATTGAAGGTTCATCCAGTATTCTATCACATGAACCTATCTCATTATCTAACACTGATGAGAAATTAAAGGGCAAGGCTGTGGCTGTGGCTGAATTTTCTGGTGTTGTTACACAGGATTTGTTGCCCGAATTCAAAGGAGTTGCCTCTGAGCCTGATTTGGAAGACATCACTCCCAAAGTTGTTGATTCATCCACCAAAAGGGACTCTCCTACGAAGGAGGATGAGGATATGAATATGCCTCTTAAGCTGCTGAGGAGGAGTATCAAGATTGAAAAGCTCTAG 1674 0.3817 MANLLKFSPISEISSQKTFWNLKGKVIRLWRVSDFNHSALPFSIEMVLLDEAGNKIHASIKKTLLYKFKNNIFEGKCYNFENLGVAINGGSYGTTRHGYKLNFQFSSKVQYLPNLKIIRSPYNLIPISEIVGGSFDFDYLPDVIGVISGVGTERELERNGSTTKLNVIELEAEGHKIKCTLFGSYVDELNSFIASGENQNAIVIVQLAKAKTFQDKIHLQNCLNCTKLVFNPTFPDGISFRNRLAEIVDTPSPLALTQLQPEQRVEPRDDFLFNTQRRTMQGLKDSSTDSVYVVIGTVERIVNQENFWYTACICSKAVIPDSQMFFCEKCDKHVKKVFPRYYLKIRAIDHTDCATLVIFDKECTSLFNKSCVDMLSQHEQVVSEGQLPPPMHALIGQTYLFKVETKANFSPRFERSFRVKKICVDPVVINEFKKKWDREEASFAKHANESASLSVLMDKGKTPMIEGSSSILSHEPISLSNTDEKLKGKAVAVAEFSGVVTQDLLPEFKGVASEPDLEDITPKVVDSSTKRDSPTKEDEDMNMPLKLLRRSIKIEKL* 558
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal3g1279 557 SUPERFAMILY Nucleic acid-binding proteins 282 428 IPR012340 -
Mal3g1279 557 PANTHER REPLICATION FACTOR A 1, RFA1 24 375 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Mal3g1279 557 SUPERFAMILY Nucleic acid-binding proteins 122 244 IPR012340 -
Mal3g1279 557 Gene3D - 116 249 IPR012340 -
Mal3g1279 557 CDD RPA1_DBD_A_like 22 109 - -
Mal3g1279 557 CDD RPA1_DBD_C 286 435 IPR013955 -
Mal3g1279 557 Gene3D - 271 435 IPR012340 -
Mal3g1279 557 MobiDBLite consensus disorder prediction 519 544 - -
Mal3g1279 557 CDD RPA1_DBD_B_like 142 236 - -
Mal3g1279 557 SUPERFAMILY Nucleic acid-binding proteins 6 115 IPR012340 -
Mal3g1279 557 Gene3D - 5 111 IPR012340 -
Mal3g1279 557 PANTHER ANIMAL RPA1 DOMAIN PROTEIN 24 375 - -
Mal3g1279 557 Pfam Replication factor-A C terminal domain 294 411 IPR013955 -
Mal3g1279 557 Pfam Domain of unknown function DUF223 45 139 IPR003871 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal3g1279 Mal-Chr3 55350530 55353370 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal3g1279 9 359 Core DNA Replication Machinery Family AT2G06510 21.351 4.80e-13 70.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal3g1279 - - mtr:MTR_4g036240 634.795