Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal3g1259 ATGGGAGTTCACGGTCTCTGGGAACTACTCTCCCCCGTCGGTCGCCGCGTCTCCGTCGAAACTCTCGCCGGAAAAACACTTGCCGTCGACGCGAGTATATGGATGGTTCAGTTTATCAAAGCGATGCGTGATGAGAAAGGTGAAATGGTTCGTAACGCTCATTTGCTTGGATTCTTCCGTCGCATTTGTAAGCTTTTGTTTCTGAGGACGAAGCCGGTTTTCGTTTTTGACGGTGGAACGCCGGCTTTGAAGCGGCGGACGGTTATTGCTCGCCGTAGACAGCGGGAGAATGCTCAGGCGAAAGTTCGTAAGACTGCCGAGAAATTGCTTCTCAATCACTTAAAAGCATTGAGGTTGAAAGAACTGGCTGATGATATTAAGAACCAGAGGCTGAAGCAAAAGAGTGCCACGAAGTCTAAGGGAAAATCTAATCAGATGGACTCTATTGGCAGTGATTTAGAAAGAAGTCACACAAAAGAGCTAGAAGAAATGTCTGCAGCTCTATCTGTGGCTAAGGAGGATAGAAATCTATCGCAGACTAAAGTATCGACAAGTTGTAACCAAGAGGAGCTTGATGAAATGTTGGCAGCATCTATAGCTGCAGAGGAAAATGAATTACGATCCAGAGAAGGAGTGGCATCTACTGTAATTAGTTCTACAGATGCAGACGAAGAGACGATACTGCCTGCAGCCAATGAGGAAGTTGATTTAGCTGTTTTAGCTGCTCTGCCACACTCAATGCAACTTGATATTCTTGCGCAGCTTAAAGGGAAGAAAACAGAAGGGCTAATGAAGCAAGTTGACAGCCAGATAAGACATGGGGTCCGTGATTGTGACAAGGGTAAAGGGATTATTTTCAATGAAACTGACATTGTTGGGTGTAGCTCAAAATGTGATGTCAATGTAGCATCAAGCAGTGACGATCAAAGCAGAATTGATGAAATGTTAGCCGCATGTATTAATATGGAGGAAAATGCGAAGTTAGTAAAAAATGTAACAAGTTCAAGTTCTCTCGGGGATTCCACCAATAAGGAAAAGGATGGTAACTATGATGAAGATGAAGATGAAGAGATGATACTGCCATCTATGCACAGTGAAGTTGATCCAGCTGTTCTGGCCTCTCTGCCTCCATCAATGCAACTGGACCTCCTTGTTCAGATGAGAGAGCGGTTGATGGCAGAGAACAGACAAAAGTATCAGAAAGTCAAGAAGGATCCTGCAAAGTTCTCTGAGCTACAAATACAAGCTTACCTTAAAACTGTTGCTTTCCGTCGCGAGATAAATGAAGTGCAGAAAGCTTCTGTTGGAGGAGGAGTAGGTGGGGTACAAACTTCACGGATTGCATCTGAAGCCAACCGAGAGTATATATTCTCGTCATCTTTCTCCGGTGACAAACAAGGACTTACCTCCACCAGATTAGAGAGAAATGTTGAAGATACACAACAAATTGAACGGGGAACACATCCTTCACAGAATTTTGTAAATAACATAGCTGCAGGAAATGTTTCTAATACTTCAGCTGGATTGGTAGGCTATGATCCTAGTGAGCCTGTTGATGAAAGTATTGAGACATATCTAGATGAGAGGGGTCGGTTTCGAGTTAGTAGATCAAGGGCTATGGGGATGCGTATGACCCGCGATATACAAAGGAATTTGGATTTGATGAAGGAGATTGAGCATGACAGAACATGTGTGAACAAGGTTGATAATATTGAAACGGTGCTGAATACAGAAAATAGTCCATCAGAATGTTCTGGGAATCAGCTTAGTGGTAAAGCACAAGAGGTGAATTTTGACTTAGCTGGAGATAATGTGCAAAATGAGAAATCAATGCTTGGTAATGATACTTCTATAGAGATATCCTTTGAATATGATTGCAAGAATGAATTTGCAAGTGGTAGGGATGATATATTTGCCAGTTTAGTAGGAGGAATATCTATGGAACACTCTCATGCTGATAATACTGTGGTGAAAGTGCAACCATCTGGTTCTGATTCAGATTGTGATTGGGAAGAAGGAACTGTTCAGGGTAAGGATACCATTTTTTCTGGATATAATGAAGCGGGATTGAAGTCTCCAGGTGAGTATGATGATAATAATAATGAAAGTGAAGTAGAATGGGAAGAAGGGGATTGTAATGGTACTAAAAGTACCTTCTTGTGTCCAGCTGAGTCGGGAAAAATGGCATCAAAAGGGCGCTTTGAAGAGGAGTCTGATTTGCATGAGGCAATTAGGAGAAGTCTTGAGAGTACACAGGATGGGAAACTTAAATGCGTGTCATCTTCAGATGAGCATTCAAGTGCTTATGAGAATAAATTGGATCCTAATTTAGAACATGGTGATAACGTTGGTTTTGACCCAAACTCAATGGATTTAAATGATAATATGGTGGGTTCCAATTTGCCTAGGGAAGTTCATACTGAACAAAGTGAATTACATGATACTGTAGGAGACAAAAAGGAAAATTATTTGACTAGAAACAGCCCAGAAACTTCCCATTTCAACGGAAGTCAGCCAAAGTCATTTGTGGCAATTAATTCCAATAACATAGATACATTGATTAACAAACCTAGCAAACTGGATGAACACGATATTTCTGAAAATTCAATTTCAGATACAACTGCTATGATGATGGATGAAGTTCCTAATCCTATTGTTGCAGAGGAATCATTGGATAGTCATAATGATGGTAAAGCGTCTTTCGGTTATAACAATTTGTCCAAGGTTGATGTGACTGGAGAGGAGAAACATAAGTCTATTAATGAATCTGAACCATTGAGTAATTCTACTGACAATACAAATACTGCTATTCTTTCCATGGAGTCATCTTTAAAAGGAGCTAAAGAAGACATTGAAATGGAGCTAAAATTGCCTTCAGTCAACAATGATGGAAATTTGTCTATGGAAAGGTCTAGTTACCTCTCCCAAGACTCAATGAACGCCCCAGGAGATTTTCCTGTACAATTGGATGAGGTTCGATTGAATGAAGAAATGCAAATTCTTGACTGGGAGTATATGAACCTAGAAAATGAGCAGAGGAAACTTGAGCGTAATGCAGAATCCGTTGACAGTGAGTTATTCACTGAATGTCAGGAACTACTGCAAATGTTTGGCTTGCCATATATTATTGCTCCTATGGAAGCTGAGGCACAATGTGCGTACTTGGAACTCTCAAAACTGGTTGATGGTGTTGTGACCGATGACTCTGATGTCTTTTTATTTGGGGCACGCAGTGTTTACAAGAATATATTTGATGATCGCAAATATGTAGAGACATACTTCATGGAGGATATTGAAAAGGAGCTTGGACTGAACAGAGAAAAATTAATTCGCATGGCACTACTTCTTGGGAGTGACTATACTGAAGGTGTAAGTGGGATTGGCATTGTTAATGCTATTGAAGTTTTAAATGCTTTCCCTGAGGAAGATGGATTCCTGAAATTCCGGCAGTGGGTTGAGTCACCAGATCCCACCATCCTTGGAAGGTTGGATGCAAAAACTGCATCTAAGAAAGGGTCAAAACTTGAAGAAAAGGAGTCGCCTGATTACATCCACAAAACAAAGCAAACTTTCATGGATAAGCATAGAAATGTTAGCAAGAATTGGCATATTCCTTCTTCTTTTCCAAGTGAAACAGTTACATCTGCTTACTTATCTCCACAAGTTGACAAGTCAACTGAGCCTTTCGCATGGGGAAAGCCAGATCAACTTGTTCTTCGCAAAATGTGCTGGGAGAAATTTGGGTGGTCTAGCCAGAAAGCAGATGAATTGCTATTACCTGTTTTAAAGCAATACAACAAACATGAGACTCAACTGCGGTTGGAGGCATTTTACAGTTTCAATGAAAGATTTGCAAAAATTCGTAGCAAGAGAATCACGAAAGCAGTAAAAGGAATTACTGGTAAGCCACCTTCAGATTTAATAGCTGATTCTGCAGAGAACATGTCCAAGGGTATGAAAAATGGGATAGGAAGTCCTGTTGACCCTGGGGATGGCAAATTGGAGACTTCAAAGGGAACAGAGAAAAGTCTTGCAGCTAGGAAGAAATCAAAAACTAAAGAGTCAACGAAAAGGAAAGATGACGGTGGTTCTGTTGCTAAGCAACATGCAAAGAAAAAGAAAATCAATGATGTTTCTTCAGAACCTGCTACATCTGAGGTTGAGAATTTACAGCCATGTATGCAAACAGAAGAAGGGCAACATTCTGGTAAGGAATTGACTCAGAATAAAAGAGGCAGTGGGCAAGGAAGAGGCAAAGGCGTAGGAGTAAAAAGAGGCAGGGAGAAGAAAAGTCATCGTTTTCAATCATCTGAAACTGAAACATCATCTAGTAGTAGTGATAATGAGAATCATGAGCCAAGAGTACAAGTTGATGTGTCAACAGTTCCAGAAGTTACGCGAAGGTCAATGCGATCTCGGAAACCCGTCAAGTATTCTTTTGAGGACCTTGAAGTTGAAGATGCTGTTGATTCATTTGATCAGAGCAATCAGAATTTCTTGCGTGGAGAGCATGTAGAAGAAAAATCTGCTTGCACTGATGATGCATGTGGAGATGGTTCCAGCACAGGGATGCTAGAAATTCCTCTGAAGGATAACTTGCCGGAAGACTATCTGGAGCCAGAAACAGATGCTGGTGCAACAACACCAAGGACTCACCCATCAGATGACTATCTTGAAATGGGAGGAGGATTCTGTGTAGACGATAGTGAGATGGATAACAAAAATGATGCAATTGATGACATGAACACGAGTACTGCAAACTCTCCACCCTTTTCTGAATTTTTGGGTGAAGCTGACCGTGGTAAAAGTAGTTCAGATATATTATTTTCTGGCGCTGAAAAGGTTACAAGCGAGATACAAGATGGAGGGACATGTAAAACGTCCAACAAACTGCCAAATGACCAGCTTCTAAATGCTAACATAGGGGTCTTAATACCAGAGAATGCTCACCACAATAGTGAGAGCTCCAATGTAGCTTTTAGCGCTATGCCGTTTTTGAGGAAAAAAAGAAAGAAGTGA 5019 0.4098 MGVHGLWELLSPVGRRVSVETLAGKTLAVDASIWMVQFIKAMRDEKGEMVRNAHLLGFFRRICKLLFLRTKPVFVFDGGTPALKRRTVIARRRQRENAQAKVRKTAEKLLLNHLKALRLKELADDIKNQRLKQKSATKSKGKSNQMDSIGSDLERSHTKELEEMSAALSVAKEDRNLSQTKVSTSCNQEELDEMLAASIAAEENELRSREGVASTVISSTDADEETILPAANEEVDLAVLAALPHSMQLDILAQLKGKKTEGLMKQVDSQIRHGVRDCDKGKGIIFNETDIVGCSSKCDVNVASSSDDQSRIDEMLAACINMEENAKLVKNVTSSSSLGDSTNKEKDGNYDEDEDEEMILPSMHSEVDPAVLASLPPSMQLDLLVQMRERLMAENRQKYQKVKKDPAKFSELQIQAYLKTVAFRREINEVQKASVGGGVGGVQTSRIASEANREYIFSSSFSGDKQGLTSTRLERNVEDTQQIERGTHPSQNFVNNIAAGNVSNTSAGLVGYDPSEPVDESIETYLDERGRFRVSRSRAMGMRMTRDIQRNLDLMKEIEHDRTCVNKVDNIETVLNTENSPSECSGNQLSGKAQEVNFDLAGDNVQNEKSMLGNDTSIEISFEYDCKNEFASGRDDIFASLVGGISMEHSHADNTVVKVQPSGSDSDCDWEEGTVQGKDTIFSGYNEAGLKSPGEYDDNNNESEVEWEEGDCNGTKSTFLCPAESGKMASKGRFEEESDLHEAIRRSLESTQDGKLKCVSSSDEHSSAYENKLDPNLEHGDNVGFDPNSMDLNDNMVGSNLPREVHTEQSELHDTVGDKKENYLTRNSPETSHFNGSQPKSFVAINSNNIDTLINKPSKLDEHDISENSISDTTAMMMDEVPNPIVAEESLDSHNDGKASFGYNNLSKVDVTGEEKHKSINESEPLSNSTDNTNTAILSMESSLKGAKEDIEMELKLPSVNNDGNLSMERSSYLSQDSMNAPGDFPVQLDEVRLNEEMQILDWEYMNLENEQRKLERNAESVDSELFTECQELLQMFGLPYIIAPMEAEAQCAYLELSKLVDGVVTDDSDVFLFGARSVYKNIFDDRKYVETYFMEDIEKELGLNREKLIRMALLLGSDYTEGVSGIGIVNAIEVLNAFPEEDGFLKFRQWVESPDPTILGRLDAKTASKKGSKLEEKESPDYIHKTKQTFMDKHRNVSKNWHIPSSFPSETVTSAYLSPQVDKSTEPFAWGKPDQLVLRKMCWEKFGWSSQKADELLLPVLKQYNKHETQLRLEAFYSFNERFAKIRSKRITKAVKGITGKPPSDLIADSAENMSKGMKNGIGSPVDPGDGKLETSKGTEKSLAARKKSKTKESTKRKDDGGSVAKQHAKKKKINDVSSEPATSEVENLQPCMQTEEGQHSGKELTQNKRGSGQGRGKGVGVKRGREKKSHRFQSSETETSSSSSDNENHEPRVQVDVSTVPEVTRRSMRSRKPVKYSFEDLEVEDAVDSFDQSNQNFLRGEHVEEKSACTDDACGDGSSTGMLEIPLKDNLPEDYLEPETDAGATTPRTHPSDDYLEMGGGFCVDDSEMDNKNDAIDDMNTSTANSPPFSEFLGEADRGKSSSDILFSGAEKVTSEIQDGGTCKTSNKLPNDQLLNANIGVLIPENAHHNSESSNVAFSAMPFLRKKRKK* 1673
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal3g1259 1672 PANTHER DNA REPAIR PROTEIN COMPLEMENTING XP-G CELLS 1 259 - -
Mal3g1259 1672 MobiDBLite consensus disorder prediction 746 778 - -
Mal3g1259 1672 Gene3D - 1 188 - -
Mal3g1259 1672 SMART HhH_4 1106 1139 IPR008918 GO:0003677|GO:0003824
Mal3g1259 1672 CDD PIN_XPG_RAD2 1021 1263 - -
Mal3g1259 1672 SUPERFAMILY PIN domain-like 2 1119 IPR029060 -
Mal3g1259 1672 CDD H3TH_XPG 1107 1224 - -
Mal3g1259 1672 PRINTS Xeroderma pigmentosum group G protein signature 54 77 IPR001044 GO:0003697|GO:0004519|GO:0005634|GO:0006289
Mal3g1259 1672 PRINTS Xeroderma pigmentosum group G protein signature 96 118 IPR001044 GO:0003697|GO:0004519|GO:0005634|GO:0006289
Mal3g1259 1672 PRINTS Xeroderma pigmentosum group G protein signature 646 664 IPR001044 GO:0003697|GO:0004519|GO:0005634|GO:0006289
Mal3g1259 1672 PRINTS Xeroderma pigmentosum group G protein signature 2 19 IPR001044 GO:0003697|GO:0004519|GO:0005634|GO:0006289
Mal3g1259 1672 SUPERFAMILY 5' to 3' exonuclease, C-terminal subdomain 1104 1286 IPR036279 -
Mal3g1259 1672 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 72 91 IPR006084 -
Mal3g1259 1672 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 24 38 IPR006084 -
Mal3g1259 1672 Pfam XPG N-terminal domain 1 97 IPR006085 GO:0004518
Mal3g1259 1672 PANTHER DNA REPAIR PROTEIN COMPLEMENTING XP-G CELLS-RELATED 1 259 - -
Mal3g1259 1672 SMART xpgn3 1 98 IPR006085 GO:0004518
Mal3g1259 1672 MobiDBLite consensus disorder prediction 130 154 - -
Mal3g1259 1672 MobiDBLite consensus disorder prediction 1334 1379 - -
Mal3g1259 1672 PANTHER DNA REPAIR PROTEIN COMPLEMENTING XP-G CELLS-RELATED 258 1672 - -
Mal3g1259 1672 MobiDBLite consensus disorder prediction 1380 1414 - -
Mal3g1259 1672 MobiDBLite consensus disorder prediction 332 355 - -
Mal3g1259 1672 PANTHER DNA REPAIR PROTEIN COMPLEMENTING XP-G CELLS 258 1672 - -
Mal3g1259 1672 Pfam XPG I-region 1038 1119 IPR006086 GO:0004518
Mal3g1259 1672 SMART xpgineu 1035 1104 IPR006086 GO:0004518
Mal3g1259 1672 Gene3D - 988 1103 - -
Mal3g1259 1672 MobiDBLite consensus disorder prediction 1316 1472 - -
Mal3g1259 1672 MobiDBLite consensus disorder prediction 1503 1603 - -
Mal3g1259 1672 ProSitePatterns XPG protein signature 2. 1038 1052 IPR019974 GO:0016788
Mal3g1259 1672 ProSitePatterns XPG protein signature 1. 70 84 IPR019974 GO:0016788
Mal3g1259 1672 CDD PIN_XPG_RAD2 2 92 - -
Mal3g1259 1672 Pfam Ubiquitin binding region 231 254 IPR025527 -
Mal3g1259 1672 Pfam Ubiquitin binding region 365 392 IPR025527 -
Mal3g1259 1672 Coils Coil 991 1025 - -
Mal3g1259 1672 Gene3D - 1104 1192 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal3g1259 Mal-Chr3 53850279 53864071 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal3g1259 1029 1136 Core DNA Replication Machinery Family AT5G26680 36.036 3.06e-12 68.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal3g1259 K10846 - gmx:100820295 1999.56