Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Mal3g1247 | ATGCCTCCAAAGAAGAAACCCAACAATCCATCATCATCCTCTTCAAAGAAACCAAATCCACAACAACCTTCCAAATACGGTATCCAACACTTCTTCGATCGCCACACAACTCAACAACAAAACTCTCAGAAACTTCAATCCAACAATGTAAATTCGACATCTCAGGTTGCTACTGCTGCTTGCGATTCTCTACCACAGCCTGAAAAACCTAACGAGGCCGCGCCGCCGGTTGCTTCTTCGCCTATTAATGATGCAGATACCCTCTCCGAGGTGTCTCCAGAGATGTCAAAGACTATGTCTCGTAAACGATTCAAATTCTCACCTGGGATGTTTATCAAGCAGAGTCAGGATGATGGAGCTGATGAGGTTACATGGAAGATATCTCCAGTGAATGAAAGGCTTCAAGCAGTTTCAAAGCACATGCCTAAGATAATTCAAGCATTGGCTGATTCTTCAAGGGCCAACATGTTGCAAATTCGCCGCTGCTCAGAAGATAAGACTTCTCTGGACAAAGGTGATAAGGCTGAAGAGTTGCTTATTACATCAACTCCGAATGCATCTGCAAAAGCTCCGTTGTCATTGAGTAAATTAGGCTTGAAAAAATTAAACCCTGACCGAGGCGTGGACTGTAATGGCAATCCAACTACTCTGAGCAACCCCTCAGTGGCTGGTGGAAGAAATCCCTTCAGAACTCCACCATCTTTGTCTTGTCGCGAGTTTGCCAAGGATGTTGAGCACAATGGACCATCTGACCAGCCTTTTTTGAGACAGCACAAAAAGGCATTGCTTGAACTTTTAGATCAAGTCGAAGATGCAATTGGTGTTGATAATGATACAGTTCTTGATAAAACCACTCATTCCCTTAAATTGCAAGATGGAATTGCTAACGAGCTCCCTGTCAGAGTCAACCATCTAGTTGAAACGACTAAATCACATATACCTAAAGAGGTTGTTGGTGTTTTCTCCGATTCTAATTATTTGGTTTTGGAGGTATCTGAAAAATCGCAAACTGCCGCTCAAGGCCCATACAAGGTGCTTCGTTTACTAAATGAACAAACTGGAGAAGAGCGAGCTGTAAACTTGTGGGATGAATGGTCTTACAGTGTAGTTGCACCTGGAGATACTGTGAACATAATAGGTCAATTTGACGAAGGGGGAAATTGTGATATTAATCATGATAGCAATTTTTTGATTGTACACCCAGATATTCTTGTGTCTGGAACACGGGTTGCTTCCAGTTTTAGTTGCCCAAGGAGAACTGTCTTAGATGAGAGGCTAAAATACAATGAATACTCAACTGCAGCTTTATGTGGAACCTTGCTTCACCAAATTTTTCAGGCTGGGCTTACAAATGACAATCCTACAATAGACTTCTTGGAGTCTTACACAGAAGTGGTTTTACAAAGAAATGTTGAAAGTTTATTTGCATGTGGAGTAAACGAAAAGGATGTGCACAAAACCATGATTGATGCTATCCCTAGAATATACAGTTGGATCATGCTGTTCAGAAATATGGAGGAAAGAGAAGACCCTAATGTTAATTTTGGAAGTGTTAATGGAATGAAGAACGTTGGCATATCTGAGGTAATTGATATTGAAGAAATGGCATGGGCACCAAAATATGGTTTGAAAGGGATGATTGATGCTTCGGTTAGAGTGAAGGTTCATTCTAGAAAAGATCAACCAGAGGAGAAGATCATGCCAGTAGAGTTCAAAACTGGAAAATCACCTAGTGGCCAGACATCAGTAGAACATAATGCCCAAGTAATTTTGTACACTCTCCTGATGTCTGAAAGGTACCAGAAGACCATTGATTCTGGTCTTCTGTATTATCTCCAAACAGATCAGACACAGGGAATTACGGTTCAAAGATCTGACTTAGTTGGGTTAATAATACGGCGTAATGAGCTTGCAAGTGATATTCTGAAGGCTTTAGTCTTGCAACAACTTCCACCAGTGTTACAGAGTACTAGCATGTGCAGAGGTTGTCGACATCTTAATGTCTGTAGCATTTATCATAAGGCACATGGTGGAAGCGTCGAGAACAATGGATTGGGAGATATTTTCGATTCTAATACTAATCACTTGAGATCTTCTCATTCTAAGTTCCTCTGCCATTGGGATCATTTGATTGACTTAGAAGCTAAAGGGACTGAGTTCTTAAAGAAAGACGTGTGGCGATCATATAATTTGAGGACTCGCAGCGCCGGTGGTGTTTCTTCTATTGTTATTGATGCTTCACAAGGAATACCTTATTCAAAATCTCATGAAGATAGTCGTTTCGTTTATCGTTTTGTACTACAAGATACTTCTAACCCCTCGATAGTTTCTGATGATGATCCTTCTAGTGCCTCCTTGAAAAATGATTTGGATCTCACACTGAGAAGCGGTGACTATGTGATATTGAGTAATGAATCAAGCCATCAAACTGTTTCAAAAGGGGTGATTTCAGATATTAGTCAGAATCATATATCTGTTTCCTTTTCCAAGCTCTTGAGAATTCCTGGGAGGTCTTCCACGGAACATGATCTCGTTCAGCAGGTTTGGAGAATCGACAAGGATGAAGCTGTGACTTCGTTTGCAATTATGAGGTTTAATCTTGTACAACTTTTTCTACAAAATGATCAAAGTGGTCATCTCCGGAGGATGATTGTTGACCTTGAGGCTCCTAGATTTGACAGTAGCTCTATAGTTAGCCAGGATCCTGCAATATCTTACGTTTGGTCTGAGCAGAGTTTGAATGATGATCAACGTAGAGCAATTCTCAAGATACTTGTGGCAAAAGATTATGCACTTATATTAGGGATGCCTGGAACGGGAAAGACATCCACCATGGTCCACGCTGTGAAAGCCTTGTTGATTAGAGGCACATCCATTTTACTAACAGCCTATACAAATTCTGCTGTTGATAATTTACTAATCAAATTAAAAGCACAGGGCATTGATTTTTTACGTGTTGGAAGACATGAAGCAGTGCATGAAGAGGTCAGAGGACACTGCCTCTCAGAAACAAACGTAAAGAGTGTTGAAGATATCAAAATAAGGTTAGAACAAGTCAAAGTTGTTGCAGTTACTTGTTTGGGCATTTCCAGTCCGCTGCTTGCCAACAAGAGATTTGATGTATGCATTATGGATGAAGCCGGGCAGACCACTCTGCCGGTTTCCTTGGGCCCTCTAAGATTTGCTTCAACGTTTGTTCTTGTGGGGGATCATTATCAACTGCCACCACTTGTCCATAGTACAGAGGCTCGAGAGAATGGCATGGGGATGAGTTTGTTTTGTAGGCTTTCTGAAGCTCATCCACAGGCAATTTCAGCTTTACAGAGTCAGTACCGTATGTGTCAGGGTATTATGGACTTGTCAAATGCCTTGATATATGGCGACAGACTGAGGTGTGGTACATCTGAGATAGCTAATGCCAGACTTGAGTTTTCTGGCTTAAACTGCTGTTTGCCTTGGCTAGAAGATGTTTTGAATCCCGGAAGGCCAGTGATATTTATAGATACTGATATGCTGCCTGCCTTAGAGGAAAGGGATCACAAAATTGTAAATAACCCGATTGAAGCTCACATAATCGCTGAGGTTGCAAAGGAATTGGTAAAAAATGGAATTGGAGGAGAGAATATTGGCATTATTACTCCCTATAATTCACAGGCAAACCTCATCCGGCAGGCTGCTTGTATAACATCCTTAGAGATACATACCATTGACAAATACCAGGGTAGAGATAAAGACTGTATATTAGTATCTTTTGTACGGTCTTGTGAGAACCCAACAAGCTGCGTCGCTTCTCTACTCGGAGACTGGCACAGGATAAATGTGGCTCTTACTCGTGCTAAGAGAAAGTTGATAATGGTGGGGTCTCGTAAAACTCTTTTGAAGGTTCCACTACTGAAGCTTCTGATAAAGAAAGTTGAGGAGCAATCTGGAATTTTAAATGTGTCTAAGAAGGATATCTATAGAAAAGGGGAGCTCATTAGATGTTCTCAAATTGCCTGTTCAGAACAAAAATTAGATGTTCCTAAATGA | 4029 | 0.4108 | MPPKKKPNNPSSSSSKKPNPQQPSKYGIQHFFDRHTTQQQNSQKLQSNNVNSTSQVATAACDSLPQPEKPNEAAPPVASSPINDADTLSEVSPEMSKTMSRKRFKFSPGMFIKQSQDDGADEVTWKISPVNERLQAVSKHMPKIIQALADSSRANMLQIRRCSEDKTSLDKGDKAEELLITSTPNASAKAPLSLSKLGLKKLNPDRGVDCNGNPTTLSNPSVAGGRNPFRTPPSLSCREFAKDVEHNGPSDQPFLRQHKKALLELLDQVEDAIGVDNDTVLDKTTHSLKLQDGIANELPVRVNHLVETTKSHIPKEVVGVFSDSNYLVLEVSEKSQTAAQGPYKVLRLLNEQTGEERAVNLWDEWSYSVVAPGDTVNIIGQFDEGGNCDINHDSNFLIVHPDILVSGTRVASSFSCPRRTVLDERLKYNEYSTAALCGTLLHQIFQAGLTNDNPTIDFLESYTEVVLQRNVESLFACGVNEKDVHKTMIDAIPRIYSWIMLFRNMEEREDPNVNFGSVNGMKNVGISEVIDIEEMAWAPKYGLKGMIDASVRVKVHSRKDQPEEKIMPVEFKTGKSPSGQTSVEHNAQVILYTLLMSERYQKTIDSGLLYYLQTDQTQGITVQRSDLVGLIIRRNELASDILKALVLQQLPPVLQSTSMCRGCRHLNVCSIYHKAHGGSVENNGLGDIFDSNTNHLRSSHSKFLCHWDHLIDLEAKGTEFLKKDVWRSYNLRTRSAGGVSSIVIDASQGIPYSKSHEDSRFVYRFVLQDTSNPSIVSDDDPSSASLKNDLDLTLRSGDYVILSNESSHQTVSKGVISDISQNHISVSFSKLLRIPGRSSTEHDLVQQVWRIDKDEAVTSFAIMRFNLVQLFLQNDQSGHLRRMIVDLEAPRFDSSSIVSQDPAISYVWSEQSLNDDQRRAILKILVAKDYALILGMPGTGKTSTMVHAVKALLIRGTSILLTAYTNSAVDNLLIKLKAQGIDFLRVGRHEAVHEEVRGHCLSETNVKSVEDIKIRLEQVKVVAVTCLGISSPLLANKRFDVCIMDEAGQTTLPVSLGPLRFASTFVLVGDHYQLPPLVHSTEARENGMGMSLFCRLSEAHPQAISALQSQYRMCQGIMDLSNALIYGDRLRCGTSEIANARLEFSGLNCCLPWLEDVLNPGRPVIFIDTDMLPALEERDHKIVNNPIEAHIIAEVAKELVKNGIGGENIGIITPYNSQANLIRQAACITSLEIHTIDKYQGRDKDCILVSFVRSCENPTSCVASLLGDWHRINVALTRAKRKLIMVGSRKTLLKVPLLKLLIKKVEEQSGILNVSKKDIYRKGELIRCSQIACSEQKLDVPK* | 1343 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Mal3g1247 | 1342 | CDD | SF1_C_Upf1 | 1113 | 1289 | IPR041679 | - | |
| Mal3g1247 | 1342 | Pfam | DNA replication factor Dna2 | 351 | 553 | IPR014808 | - | |
| Mal3g1247 | 1342 | Gene3D | - | 1111 | 1324 | IPR027417 | - | |
| Mal3g1247 | 1342 | MobiDBLite | consensus disorder prediction | 8 | 61 | - | - | |
| Mal3g1247 | 1342 | MobiDBLite | consensus disorder prediction | 209 | 225 | - | - | |
| Mal3g1247 | 1342 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 912 | 1299 | IPR027417 | - | |
| Mal3g1247 | 1342 | MobiDBLite | consensus disorder prediction | 205 | 228 | - | - | |
| Mal3g1247 | 1342 | MobiDBLite | consensus disorder prediction | 1 | 92 | - | - | |
| Mal3g1247 | 1342 | Pfam | AAA domain | 1089 | 1289 | IPR041679 | - | |
| Mal3g1247 | 1342 | Gene3D | - | 406 | 670 | IPR011604 | - | |
| Mal3g1247 | 1342 | PANTHER | DNA2/NAM7 HELICASE FAMILY | 182 | 1307 | IPR045055 | - | |
| Mal3g1247 | 1342 | Gene3D | - | 839 | 1110 | IPR027417 | - | |
| Mal3g1247 | 1342 | Pfam | Domain of unknown function DUF83 | 562 | 670 | IPR022765 | - | |
| Mal3g1247 | 1342 | PANTHER | DNA REPLICATION ATP-DEPENDENT HELICASE/NUCLEASE DNA2 | 182 | 1307 | IPR026851 | GO:0017108|GO:0017116|GO:0033567 | |
| Mal3g1247 | 1342 | CDD | DEXXQc_DNA2 | 912 | 1112 | - | - | |
| Mal3g1247 | 1342 | Pfam | AAA domain | 913 | 1004 | IPR041677 | GO:0004386 | |
| Mal3g1247 | 1342 | Pfam | AAA domain | 1015 | 1080 | IPR041677 | GO:0004386 |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Mal3g1247 | Mal-Chr3 | 52982344 | 53008712 | Transposed |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Mal3g1247 | 1 | 1054 | Core DNA Replication Machinery Family | AT1G08840 | 54.236 | 0.0 | 1099 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Mal3g1247 | K10742 | - | gmx:100799415 | 1795.4 |