Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal3g1246 ATGATCCCAACCCCTCCGTACAAGGCTGCAAACACTATTGGAGCCCAGAAAGAAATTTTCAACGATCAAAATCCAATGACCTTTACACAAAACAATAATAAAATTGAAGTCATGCATGAACACCTTAACACTAGCAAAGGAATTTGGGATTTGTCCAAACAAAATTTATTTCGATATGGTGAAACTTCTCAATCTCGCGTTTGTACCACTTTATCACCATCACTAGTTAATGAGGCAAATCCATCTTTGTTAGTTAATACTAGGATTCAAGCCGATTTGTCCTGCGTTGGTGGATTTGGAAACAAACCCAGAGACAAAGATCAAGGACTCATTTTGAGTGACCAAAAGCGGCAAAAGAGGGTTGACAAGAATACAGGAACTCAACAAAAGGATTCCAGTATAATCAAAGGCCAATGGACTCAAGATGAGGATAGGATTCTTTTTCAATTGGTGAACAAATCTGAGCTTACTAACTGGTCACAGATTGCTACGCTTATAAATGGTAGGACCGGAAAACAATGCAGGGAGAGATGGTATAACCATTTTCGACCGGACATTAAGAAAGAATCATGGAGCGAAGAGGAAGATAGAATATTGATCGAAGCTCACAAGATAGTTGGGAACAAGTGGGCTGAAATTGCAAGTAAACTGCCTGGACGCACCGAGAACTCCATCAAGAACCGTTGGAACTCCACTAAGTGCAGCCTCAACGCTACAAAGAAGCCGAACCGGCGGAATAGTTTGAAAGGAACACTAATTCATAAATACATTAGTGAAATCACTGATGCTAAGGATGTTGAAAACGAGCCGAAGAATTGCACCAACATGATGAATATTTTGCATAAGACAAATTTCGACAATACCAATACCAATCTTGGTCTTAGTAATGTTCTGTATGAAATTTCAGAGAGTGGTTTTAGCTCTGAAGGTTTTGTTACTCCAGTAGAAGAACTTGGAGGCAATTTGGCAATGATGCTTAATGGTGATGAAGGAATTGGAAGTGGCTCTAGCACAATGAATTATGAGTTTGGTTCGTAG 1038 0.396 MIPTPPYKAANTIGAQKEIFNDQNPMTFTQNNNKIEVMHEHLNTSKGIWDLSKQNLFRYGETSQSRVCTTLSPSLVNEANPSLLVNTRIQADLSCVGGFGNKPRDKDQGLILSDQKRQKRVDKNTGTQQKDSSIIKGQWTQDEDRILFQLVNKSELTNWSQIATLINGRTGKQCRERWYNHFRPDIKKESWSEEEDRILIEAHKIVGNKWAEIASKLPGRTENSIKNRWNSTKCSLNATKKPNRRNSLKGTLIHKYISEITDAKDVENEPKNCTNMMNILHKTNFDNTNTNLGLSNVLYEISESGFSSEGFVTPVEELGGNLAMMLNGDEGIGSGSSTMNYEFGS* 346
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal3g1246 345 CDD SANT 190 233 IPR001005 -
Mal3g1246 345 Pfam Myb-like DNA-binding domain 139 196 - -
Mal3g1246 345 Gene3D - 190 232 - -
Mal3g1246 345 CDD SANT 139 182 IPR001005 -
Mal3g1246 345 PANTHER MYB DOMAIN PROTEIN 100-RELATED 27 277 - -
Mal3g1246 345 MobiDBLite consensus disorder prediction 107 126 - -
Mal3g1246 345 ProSiteProfiles Myb-like domain profile. 131 182 IPR001005 -
Mal3g1246 345 MobiDBLite consensus disorder prediction 106 134 - -
Mal3g1246 345 PANTHER MYB PROTEIN-RELATED 27 277 - -
Mal3g1246 345 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 131 182 IPR017930 -
Mal3g1246 345 SUPERFAMILY Homeodomain-like 134 229 IPR009057 -
Mal3g1246 345 ProSiteProfiles Myb-like domain profile. 183 233 IPR001005 -
Mal3g1246 345 Gene3D - 135 187 - -
Mal3g1246 345 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 183 237 IPR017930 -
Mal3g1246 345 SMART sant 187 235 IPR001005 -
Mal3g1246 345 SMART sant 135 184 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal3g1246 Mal-Chr3 52621825 52625005 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal3g1246 128 260 MYB Transcription Factor Family AT4G18770 59.398 1.82e-50 172
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Mal3g1246 Myb_DNA-bind_6 1.1e-17 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal3g1246 K09422 - mtr:MTR_7g035350 430.639