Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal3g1231 ATGGATAGAGCATTTGATTCATTGTCTGATGTTGTTCCTGGAAGGGATACATGGAGGATAAAGGTTCGAGTGGTTCGAATTTGGGAGGGTTCTAAGATTCATGCTACCGTCCGAAAACAACTTATGTACTTATTCCAGAAGAAATTAATTGAAGGAGAGGTGTATAAGATGTCTTATTTTGTTGTTGCTCCAGCCTTTGGATCATACCGTACCACGCTTCATCCTTACAAGCTTTTGTTCCAGATGAAAACTAAGGTTCAGTCATGTGTGAGTCAGCTCATTCCAATCCACACTGTTGGTTATGAATACTTAGTTGATGTTATAGGGATGATCACTGGGATATCTGAGGAAAGGGAATATATTAGGGATTCTGCAATCACCAAGATGGTTATCATTGAAATCACTGATCAAAGTGGGAAGGTTGAATGTGCACTCTTTGGTGAATATGTGGAGGTTCTGAAAAAAATGATGGAGTCATCTTTTGAAGGGCTTCCTGTCATTGTTGTTCAGTTTGCGAAGATTAAGTTTTTCATGTATAAGGTGTCAATTCAAAATGTTAAGAGTACAACTAGGATTTTGCTGAATCCAGATATTCCTCAGGTTGCTGTGTTGAAAAAGGGGATGTTTGAACATGGTGTTGAGTCTGCTTCATCTGTTACTAAGCTGGGTTCACGTTCAAAGCCATCGTTTGATGAAGAATTTCTGCGTATGTTTCCAAAGAAGAGTATTGCACAGCTGAATGACTCAGCTGAGGATGGAAATTTTGTTGTAAGTGCAATTGTGACTGGATTTGTTGAAGGAGAAGAATGGTGGTATCCTGCCTGTAAGTGTCATAGGAGTGTCACTGCAGATTCTGGTGTTTATTATTGCAAAGGATGCGTTAAGCATGTTTTTCAAATGGTTCCTAGGTATAAAGTTAAGGTGATTGTTGAAGATGGTACTGGGGAAGCAGTGTTTGTTCTATTTGATAATGATGTCCATTATCTTCTTGAGAAACCATGCAAAACTATGGTGTCAAACTCTAATGCTGAAAATGCTGGGTTTTATCCACCTGATCTCATACTGTTGAAGGGTAGTAGAATTCTCTTTAAGGTTGTAAAGTCTTCAGTTGCAAGCTCTCTTTTTGAGGGATCTTACAGGGTCAAACGTGTTTGTAAGGAACAATCTATCATTGATAGTTTTGCAAGTGATGGTGTTGAATACACACCTACTAAGTCCATAGCATGTGACAAAGAAAGTTCTGGTGCTGCTGTGGATAATGATATTGACTATGCTGCTACTTCTGTGAACATATCCGATTGTGCTATTAACCTTGGTGATGATGCTGGTTATGTTGATGAAACTCAAGTTGATAACCTTGCTGAAGGATCTGATGAGAGTTCTACTAAGTGTAATCTCACAACATCATTTGATGTTGTTACTGGGACTAGATCTAACAGAAGATTGAATAAGATTAAAGTTGAAAATGAGTGA 1473 0.3842 MDRAFDSLSDVVPGRDTWRIKVRVVRIWEGSKIHATVRKQLMYLFQKKLIEGEVYKMSYFVVAPAFGSYRTTLHPYKLLFQMKTKVQSCVSQLIPIHTVGYEYLVDVIGMITGISEEREYIRDSAITKMVIIEITDQSGKVECALFGEYVEVLKKMMESSFEGLPVIVVQFAKIKFFMYKVSIQNVKSTTRILLNPDIPQVAVLKKGMFEHGVESASSVTKLGSRSKPSFDEEFLRMFPKKSIAQLNDSAEDGNFVVSAIVTGFVEGEEWWYPACKCHRSVTADSGVYYCKGCVKHVFQMVPRYKVKVIVEDGTGEAVFVLFDNDVHYLLEKPCKTMVSNSNAENAGFYPPDLILLKGSRILFKVVKSSVASSLFEGSYRVKRVCKEQSIIDSFASDGVEYTPTKSIACDKESSGAAVDNDIDYAATSVNISDCAINLGDDAGYVDETQVDNLAEGSDESSTKCNLTTSFDVVTGTRSNRRLNKIKVENE* 491
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal3g1231 490 Gene3D - 227 392 IPR012340 -
Mal3g1231 490 Pfam Replication factor-A C terminal domain 257 346 IPR013955 -
Mal3g1231 490 CDD RPA1_DBD_B_like 106 206 - -
Mal3g1231 490 Pfam Domain of unknown function DUF223 29 89 IPR003871 -
Mal3g1231 490 PANTHER REPLICATION FACTOR A 1, RFA1 30 338 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Mal3g1231 490 SUPERFAMILY Nucleic acid-binding proteins 96 206 IPR012340 -
Mal3g1231 490 PANTHER ANIMAL RPA1 DOMAIN PROTEIN 30 338 - -
Mal3g1231 490 CDD RPA1_DBD_C 255 365 IPR013955 -
Mal3g1231 490 Gene3D - 29 89 IPR012340 -
Mal3g1231 490 SUPERFAMILY Nucleic acid-binding proteins 241 352 IPR012340 -
Mal3g1231 490 SUPERFAMILY Nucleic acid-binding proteins 4 90 IPR012340 -
Mal3g1231 490 CDD RPA1_DBD_A_like 19 86 - -
Mal3g1231 490 Gene3D - 90 216 IPR012340 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal3g1231 Mal-Chr3 52292127 52296036 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal3g1231 1 330 Core DNA Replication Machinery Family AT5G08020 23.280 8.95e-17 81.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal3g1231 - - mtr:MTR_8g062030 546.969