Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal3g1225 ATGGCGGAAACAAACAAGAGTTACAATGTTGTCCTTAACAACATCATCGACATTGCTAACAAAATCTCTAAAATCTCCACCTTCAATTCCTTCATCAAAACTCAATGCTACGATCTCAGCCGTAGGATCACTTTCTTCATTCCTCTTATTCAACATCTCCTTGACAACAACGATGTCGTTTTTGTTGTTCCTTATCAAGCTCTAGTTTTACTTCAACAAGCTATTCTCTCTGCTAAAGACTTGCTTCTCTTTTGCTCCCAATCAAGCAAGCTTTTCATGATATTAGAGAGAGAGAAAATTAAATGCAAATTCACTCATCTGGCTTCTCAATTTGAGCAAGCTATAAGGGAGATTTCCTATGACAAACTTGATATTTCTGAGGACCTCAAGGAGCAGGTTGCACTTGTAACTGCTCAGTTTAGAAGGGCCAAAGAGAATTTTGATCCACCTGGTGTCGAGGTTTATGAGCACTTGTTGTCTATTTATAACAAGAGTTCTGATGTGAATACTGAAACTGCTGCACTACGTTTAATCTGTGATAAGCTACAATTTGTAAGTTTGGAAGATATCAAACACGAGTCACTTGCATTACATAAGATGATTGTTGACGGGGGTCGTTGGTTTGAGAAAAGCACAGAGGAGTTGTCAACTGTGCTGAAAAGAATTGAAGATTTTTTGTTGAAGGAATCTGAAAACATTGCTACTTTTACTAGCGAGGATTTATATTTATTTCGTCATAGTAATAGGCCATGCATGAAATTAAGGTGTGAGTCACCAGTTGTACCGGAGGAGTTTCGCTGCCCAATATCTCATGAGCTAATGAAAGATCCTGTTACCATTTCCACAGGACAGACATATGATCGAGCTTGCATAAAGAAATGGTTTGATGCTGGTAATCAAACATGTCCCAAAACTCGACAGATTATTTCCAGCTCCATCCTCAAAGCTAACAATGATTTATACCTCCGGATATTAACCTGGTGTAAGAAAAATGGAGTAGAACCACCTAGAAGGTTAGGAAATTTCCGGATCTGTATTGAAAGATCAGATGGCTCTTCTGAACTGATAGATCTTGATAGCTTAAAGAGGAAACTTACTTCCGGTTGCATTGAGGAGCAGCGTTGTGCAACAGGAGATCTCATTCTTTTTGCAAAATATGATCAAGTTTTTCAAAAGTCGTTTGCTGAAGCTGGTATTATACCCCTCCTTGTTGACCTCCTCTATATTCATGATGCTGGCACCCAGGAGAATGCAGTCACTGCTCTTCTCAATATATCTATCTATGAAGAAAACAAACAGCGCATCATGGCTTCCAAGGAGGCTGTGCAGGGAATCCTTCACGTTCTCAAGAATGGTAATATGGAAGCTCGTAAAAATGCAGCAAACACCTTTTGCAGTCTCTCTGCAGTGGATGATAACAAAAGGGTAATCGCTTCATCTGGAGCAATCGAAGCACTAATTACTCTCTTTTGCGAAGGAAGTAAAAGTGGAAAGACTGAGGCTGCAAAAGCACTGTTCAAACTATGTTTATACCAAGGAAACACAGAACGTGCTATTAAGGCCGGTATTGTGCCCAAGTTGATAGAAATATTAACAGAACCAGGTGGTGAGATGCAGGATGAGGCATTGATAATCATGCTTCTAATAGTTAGGCACCAGGACGGAAATGCAGCAATTCGACCTATGAAGACTATATCCACTTTGGTGGAATTAATCAGCAATGGATCTTCTGTGAACAAAGAGAATGCAACTGATGTGCTTGTGTACCTTTGTCGTGGAGATCCGCTACTGGTATAA 1797 0.3984 MAETNKSYNVVLNNIIDIANKISKISTFNSFIKTQCYDLSRRITFFIPLIQHLLDNNDVVFVVPYQALVLLQQAILSAKDLLLFCSQSSKLFMILEREKIKCKFTHLASQFEQAIREISYDKLDISEDLKEQVALVTAQFRRAKENFDPPGVEVYEHLLSIYNKSSDVNTETAALRLICDKLQFVSLEDIKHESLALHKMIVDGGRWFEKSTEELSTVLKRIEDFLLKESENIATFTSEDLYLFRHSNRPCMKLRCESPVVPEEFRCPISHELMKDPVTISTGQTYDRACIKKWFDAGNQTCPKTRQIISSSILKANNDLYLRILTWCKKNGVEPPRRLGNFRICIERSDGSSELIDLDSLKRKLTSGCIEEQRCATGDLILFAKYDQVFQKSFAEAGIIPLLVDLLYIHDAGTQENAVTALLNISIYEENKQRIMASKEAVQGILHVLKNGNMEARKNAANTFCSLSAVDDNKRVIASSGAIEALITLFCEGSKSGKTEAAKALFKLCLYQGNTERAIKAGIVPKLIEILTEPGGEMQDEALIIMLLIVRHQDGNAAIRPMKTISTLVELISNGSSVNKENATDVLVYLCRGDPLLV* 599
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal3g1225 598 SMART arm_5 428 469 IPR000225 GO:0005515
Mal3g1225 598 SMART arm_5 511 551 IPR000225 GO:0005515
Mal3g1225 598 SMART arm_5 470 510 IPR000225 GO:0005515
Mal3g1225 598 SMART arm_5 387 427 IPR000225 GO:0005515
Mal3g1225 598 SMART arm_5 552 592 IPR000225 GO:0005515
Mal3g1225 598 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 261 334 IPR013083 -
Mal3g1225 598 Pfam U-box domain 261 331 IPR003613 GO:0004842|GO:0016567
Mal3g1225 598 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 398 438 IPR000225 GO:0005515
Mal3g1225 598 Coils Coil 126 146 - -
Mal3g1225 598 ProSiteProfiles U-box domain profile. 260 334 IPR003613 GO:0004842|GO:0016567
Mal3g1225 598 Gene3D - 10 121 IPR036537 GO:0007166
Mal3g1225 598 Gene3D - 345 597 IPR011989 -
Mal3g1225 598 PANTHER U BOX DOMAIN-CONTAINING 9 595 - -
Mal3g1225 598 SUPERFAMILY ARM repeat 358 596 IPR016024 -
Mal3g1225 598 Pfam Armadillo/beta-catenin-like repeat 396 426 IPR000225 GO:0005515
Mal3g1225 598 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 9 595 - -
Mal3g1225 598 CDD RING-Ubox_PUB 265 307 IPR045210 -
Mal3g1225 598 SUPERFAMILY RING/U-box 261 336 - -
Mal3g1225 598 SMART Ubox_2 264 327 IPR003613 GO:0004842|GO:0016567
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal3g1225 Mal-Chr3 52218089 52224121 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal3g1225 14 595 U-box Gene Family AT3G46510 42.637 7.17e-166 486