Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal3g1224 ATGATTAAGAGGAATTGTGAAATTCAAGAGAAAGATTCCAATATAATCAAAGGCCAATGGACTACGAGTGAGGATAGGATTCTTGTCAAATTGGTTGAGCACTTTGGGCATAGAAAATGGTCTCATATTGCCAAGTTTTTTAAAGGTAGGATCGGGAAACAGTGCAGAGAGAGATGGAATCACCATCTTCGACCGGACATTAAGAAGGAGCCATTGACTGAAGAGGAAGAAAAGATATTGATTGAAACTCACAAGATAGTTGGGAACAGGTGGGCTGAAATTGCAAGGAGATTGCCAGGGCGCACTGACAACTTTATCAAGAACCACTGGAACACCAACAAGCGCCACCTAAATGCAAAGAGGAAGAACCAAGGTAATAGTTCAATGGGAACACTACTTCAGAAATATATAATGGAAGTCACTGATAATAAGGAATTTCGAAAGGAAATGATGAACAATTCCATGAGCATGATGAATATGGGGATTCAACCAAATTTTGAAAGTTCGAATAGGAATAGTGATTTGAGTTCAAAAAGTTTAGATGCTCCAGAGAAAGTGATTGATGGGTACGTATGTGGATCTGATACCACAATGAATTATGAGTTTGGATCATACGGGATGGAGTTTTTTCATGAGGTTCATATGAAGCAGGAAATGGATCTCATGAAGATGATCTATAATAGTCCTTAA 690 0.3841 MIKRNCEIQEKDSNIIKGQWTTSEDRILVKLVEHFGHRKWSHIAKFFKGRIGKQCRERWNHHLRPDIKKEPLTEEEEKILIETHKIVGNRWAEIARRLPGRTDNFIKNHWNTNKRHLNAKRKNQGNSSMGTLLQKYIMEVTDNKEFRKEMMNNSMSMMNMGIQPNFESSNRNSDLSSKSLDAPEKVIDGYVCGSDTTMNYEFGSYGMEFFHEVHMKQEMDLMKMIYNSP* 230
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal3g1224 229 Gene3D - 71 113 - -
Mal3g1224 229 ProSiteProfiles Myb-like domain profile. 12 63 IPR001005 -
Mal3g1224 229 SMART sant 68 116 IPR001005 -
Mal3g1224 229 SMART sant 16 65 IPR001005 -
Mal3g1224 229 CDD SANT 73 114 IPR001005 -
Mal3g1224 229 PANTHER MYB PROTEIN-RELATED 6 163 - -
Mal3g1224 229 ProSiteProfiles Myb-like domain profile. 64 114 IPR001005 -
Mal3g1224 229 Pfam Myb-like DNA-binding domain 20 77 - -
Mal3g1224 229 CDD SANT 20 63 IPR001005 -
Mal3g1224 229 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 68 118 IPR017930 -
Mal3g1224 229 SUPERFAMILY Homeodomain-like 14 110 IPR009057 -
Mal3g1224 229 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 12 67 IPR017930 -
Mal3g1224 229 Gene3D - 16 68 - -
Mal3g1224 229 PANTHER MYB DOMAIN PROTEIN 100-RELATED 6 163 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal3g1224 Mal-Chr3 52185959 52187483 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal3g1224 9 137 MYB Transcription Factor Family AT4G18770 62.016 4.72e-54 177
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Mal3g1224 Myb_DNA-bind_6 2.3e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal3g1224 K09422 - mtr:MTR_4g088015 293.123