Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal3g1218 ATGGTCCATTTTCAATTAAGTTCAACTCCACCACCTCCATCGTCAAATTACACCTCCTATTTGAACCAAAATCGTTGCAATCAATTTAAGGATCAACTTTTGAATGAGGCTAACAATTACTCTAGTTTTACTACCGTGGTTCCTTCCTCCATCAATCCATTGTCTATTATCTCTACCCGGTCATACAAGGTTGCGCACACCAATGGGTCCCAGATAGAATTTCCCACTGTTCGAAATTCAATGATCTTCGCACCAAACGATAACAAATTCGAAGACATGCTTGGTCGCCTAAACACTGGTAAAGGAATTTGGGACATGTCCCAAAAAAAAATCTTTCAATATGGTGAAACTTCACAACCTCGGGTGAGTCCCTCTATATCACCATCACTAGTTTATGATGAACATTTATCTATGTTTGTTAAGCCTAAGATTCAAGGAAATATTTCATGCAATGGTGGAATTGGAACCAAACCCCAAGAAAATTTTCAAGGACTTATTCTAAGTGATCAAAAGCGACGAAAGATGATTAAGAGGAATTGTGCAATTCAAGAGAAAAATTCCAATATAATCAAAGGCCAATGGACTACGATTGAGGATAGGATTCTTGTCCAATTGGTTGAGCGCTTTGGGCATAGAAAATGGTCTCATATTGCCAAGTTTTTTAAAGGTAGGATCGGGAAACAGTGCAGAGAGAGATGGAATCACCATCTTCGACCGGACATTAAGAAGGGGCCATTGACTGAAGAGGAAGAAAAGATATTGATTGAAACTCACAAGATAGTTGGGAACAGGTGGGCTGAAATTGCAAGGAGATTGCCAGGGCGCACTGACAACTTTATCAAGAACCACTGGAACACCAACAAGCGCCACCTAAATGCCAAAAGGAAGAACCAAGGTAATAATTTAATGGGAACACCACTTCAGAAATATATAATGGAAGTCACTGATAATAAGGAATTTGAAAAGGAAATGATGAACAATTCCATGAGTATGATGAATATCGGGTATCAACCAAATTTTGAAAGTTCGAATAGTGATTTGAGTTCAAAAAGTTTAGCTACTCCAGAGAAAGTGATTGATGGGTATGTGCCAATGATGATAAATTCTGATGACGGATTTGTATGTGGATCTGGTACCACAATCAATTATGAGTTTGGATCATATGGAATGGAGTTTTTTCATGAGGTTCATATGAAGCAGGAAATGGATCTCATGAAGATGATCATCTATAATAGTCCTTAA 1242 0.3816 MVHFQLSSTPPPPSSNYTSYLNQNRCNQFKDQLLNEANNYSSFTTVVPSSINPLSIISTRSYKVAHTNGSQIEFPTVRNSMIFAPNDNKFEDMLGRLNTGKGIWDMSQKKIFQYGETSQPRVSPSISPSLVYDEHLSMFVKPKIQGNISCNGGIGTKPQENFQGLILSDQKRRKMIKRNCAIQEKNSNIIKGQWTTIEDRILVQLVERFGHRKWSHIAKFFKGRIGKQCRERWNHHLRPDIKKGPLTEEEEKILIETHKIVGNRWAEIARRLPGRTDNFIKNHWNTNKRHLNAKRKNQGNNLMGTPLQKYIMEVTDNKEFEKEMMNNSMSMMNIGYQPNFESSNSDLSSKSLATPEKVIDGYVPMMINSDDGFVCGSGTTINYEFGSYGMEFFHEVHMKQEMDLMKMIIYNSP* 414
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal3g1218 413 PANTHER MYB DOMAIN PROTEIN 100-RELATED 163 332 - -
Mal3g1218 413 CDD SANT 194 237 IPR001005 -
Mal3g1218 413 ProSiteProfiles Myb-like domain profile. 238 288 IPR001005 -
Mal3g1218 413 PANTHER MYB PROTEIN-RELATED 163 332 - -
Mal3g1218 413 SMART sant 190 239 IPR001005 -
Mal3g1218 413 SMART sant 242 290 IPR001005 -
Mal3g1218 413 Gene3D - 245 287 - -
Mal3g1218 413 CDD SANT 247 288 IPR001005 -
Mal3g1218 413 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 186 241 IPR017930 -
Mal3g1218 413 ProSiteProfiles Myb-like domain profile. 186 237 IPR001005 -
Mal3g1218 413 SUPERFAMILY Homeodomain-like 188 284 IPR009057 -
Mal3g1218 413 Gene3D - 190 242 - -
Mal3g1218 413 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 242 292 IPR017930 -
Mal3g1218 413 Pfam Myb-like DNA-binding domain 194 252 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal3g1218 Mal-Chr3 52059430 52061931 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal3g1218 183 311 MYB Transcription Factor Family AT4G18770 61.240 1.36e-50 174
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Mal3g1218 Myb_DNA-bind_6 6.4e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal3g1218 K09422 - mtr:MTR_4g088015 477.248