Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal3g1213 ATGGATCACTTGCAAGAAAGTTCTACTCATTCAACTCCACCTTCACATTACACCTATTTTTCTCAAAATCATTGCAACCAATTTAAAGAAGATGATATAAATGGGGTTAATCATCACTCTAGTTTGGTTACAACGGTTCCTTCCTCCTACAATCTATCATCTATGTTCCCGACCTCTTATTACAAGCTTGCAGCCAGCAAGCAATGCCCTAAATGGACCGCAGAAGAGGATAGCATTCTTGTGGAATCGGTAGATCGTTTTACGCAATGGTCCCATATTGCTACCCTTCTAAATGGCAAGACTGAAGAACACTGCAGGAAGAGATGGTATAACTATTTTCGGCCGGATTTTAAGGATGAGCCATGGAGTGAAAAAGAGGAAAACATACTAATTGAAGCTCGCAAATATGTAGATGAAAACAATTGGAGTGAGATTGCTAGGAGATTGACAGGGCGTAGTGAGAGTTCCATTTACAACCACTGGAACGCCATTGAGCGTGTCCGAAATGCAAAGAATTCCATGAACAAGGTTAATACTGGAAACCAACTACATTTCGACAATTGCGATGAAAGTTCAGAGAGAGATTATGAAATGGAGTTTTTTCTTGAGGATTCCATTCAACAGGAAATTGATTTCACGAAGATGTTCTTTAGCCTTTAA 660 0.3955 MDHLQESSTHSTPPSHYTYFSQNHCNQFKEDDINGVNHHSSLVTTVPSSYNLSSMFPTSYYKLAASKQCPKWTAEEDSILVESVDRFTQWSHIATLLNGKTEEHCRKRWYNYFRPDFKDEPWSEKEENILIEARKYVDENNWSEIARRLTGRSESSIYNHWNAIERVRNAKNSMNKVNTGNQLHFDNCDESSERDYEMEFFLEDSIQQEIDFTKMFFSL* 220
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal3g1213 219 CDD SANT 71 113 IPR001005 -
Mal3g1213 219 Pfam Myb-like DNA-binding domain 72 127 - -
Mal3g1213 219 CDD SANT 121 162 IPR001005 -
Mal3g1213 219 Gene3D - 120 173 - -
Mal3g1213 219 PANTHER MYB DOMAIN PROTEIN 100-RELATED 66 197 - -
Mal3g1213 219 SUPERFAMILY Homeodomain-like 93 173 IPR009057 -
Mal3g1213 219 ProSiteProfiles Myb-like domain profile. 71 113 IPR001005 -
Mal3g1213 219 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 71 117 IPR017930 -
Mal3g1213 219 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 118 162 IPR017930 -
Mal3g1213 219 PANTHER MYB PROTEIN-RELATED 66 197 - -
Mal3g1213 219 ProSiteProfiles Myb-like domain profile. 114 165 IPR001005 -
Mal3g1213 219 Gene3D - 70 118 - -
Mal3g1213 219 SMART sant 118 167 IPR001005 -
Mal3g1213 219 SMART sant 68 115 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal3g1213 Mal-Chr3 51949599 51952155 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal3g1213 71 171 MYB Transcription Factor Family AT4G18770 50.485 8.91e-31 115
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Mal3g1213 Myb_DNA-bind_6 2.4e-13 CL0123