Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal3g1212 ATGGATCACTTGCAAGAAAGTTCTACTCATTCAACTCCATCTTCACATTACACCAACTTTTTTTCTCAACATCATTGCAACCAATTTAAGGAAGATCATATAAATGGGGTTAATCATCACTCTACTTTGGTTACAACGGTTCCTTCCTCCTACAATCTATCCTCCATGTTCCCGACTTCTTATTACAAGCTTGCAACCAGCAAGCAACATCCAAAATGGACCGCGGAAAAGGATAGCATTCTTGTGGAATCGGTAGATCGCTTTGTGCAATGGTCCCATATTGCTACCCTTCTAAATGGCAAGACTGAAGAACACTGCAGGGAGAGATGGTATAACTATTTTCGGCCGGATTTTAAGGATGAGCCATGGAGTGAAAAAGAGGAAAACATACTAATTGAAGCTCGCAAATATGTAGATGAAAACAATTGGAGTGAGATTGCTAGGAGATTGCCAGGGCGTAGTGAGAGTTCCATTTACAACCACTGGAACGCCATTGAGCGTGTCCGAAATGCAAAGAATTCCATGAACAAGGTTAATACTGGAAACCAACTACATTTCGACAATTGCGATGAAAGTTCGGAGAGAGATTATGAAATGGAGTTTTTTCTTGAGGATTCCATTCAACAGGAAATTGATTTCACGAAGATGTTCTTTAACCTTTAA 663 0.3997 MDHLQESSTHSTPSSHYTNFFSQHHCNQFKEDHINGVNHHSTLVTTVPSSYNLSSMFPTSYYKLATSKQHPKWTAEKDSILVESVDRFVQWSHIATLLNGKTEEHCRERWYNYFRPDFKDEPWSEKEENILIEARKYVDENNWSEIARRLPGRSESSIYNHWNAIERVRNAKNSMNKVNTGNQLHFDNCDESSERDYEMEFFLEDSIQQEIDFTKMFFNL* 221
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal3g1212 220 Pfam Myb-like DNA-binding domain 73 128 - -
Mal3g1212 220 SMART sant 119 168 IPR001005 -
Mal3g1212 220 SMART sant 69 116 IPR001005 -
Mal3g1212 220 ProSiteProfiles Myb-like domain profile. 115 166 IPR001005 -
Mal3g1212 220 PANTHER TRANSCRIPTION FACTOR MYB98 55 180 - -
Mal3g1212 220 Gene3D - 121 174 - -
Mal3g1212 220 ProSiteProfiles Myb-like domain profile. 65 114 IPR001005 -
Mal3g1212 220 Gene3D - 71 119 - -
Mal3g1212 220 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 65 118 IPR017930 -
Mal3g1212 220 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 119 163 IPR017930 -
Mal3g1212 220 PANTHER MYB PROTEIN-RELATED 55 180 - -
Mal3g1212 220 CDD SANT 72 114 IPR001005 -
Mal3g1212 220 CDD SANT 122 163 IPR001005 -
Mal3g1212 220 SUPERFAMILY Homeodomain-like 94 174 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal3g1212 Mal-Chr3 51752731 51755114 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal3g1212 72 172 MYB Transcription Factor Family AT4G18770 51.456 1.40e-31 117
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Mal3g1212 Myb_DNA-bind_6 1.8e-11 CL0123